Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02095 ATGAAGAGACTCGCCAGTTCAGATTCTTCACCTGCTCTCATCACAATCTGTCCATCAATAGAGGAACAGAGTCCGAGGAACAAGCATGTGTATGGTAGGGAATTTCAATCAATGATGTTGGATGGATTCGAAGAAGAAGAAGTGTGTGTTGAAGAACAGGAACATCACTCTGAGAAGAAACGTAGATTAAGAGTGGATCAAGTAAAGGCTTTAGAGAAAAACTTTGAGGTTGAAAACAAGCTTGAACCTGAAAGGAAAGAGAAGCTTGCAATTGAACTTGGGTTGCAGCCTAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAACAATTGGAAAGAGATTATGGAGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAGTTTGATGCAATCACTCAAGACAACAAAGCTTTGCACAACGAGATTAAGGAACTGAAATCAAGTCTCCATGAAGAAGAAAAAAGCACAGTCAGTGTTGCAGTGAAGGAAGAGATAACGATCCCTGAATCAGGCATCGACAAGCATAATAACCCATCTTCAGAAACATCAATTCCCAGTTCAGAATCAAAGGCTCACTTGAATGATGTTGGTGTTGGAGAAGCTTCTTCTTCACTCTTCCCATTAGAACTGAAAGATGGTTCTTCTGACAGCGACTCCAGTGCAATTTCTTCGTCCGGTGTTCTTCAAAATGAGCAGCATCTTTTGTTGTCTCCTGATTCTTCTCCGTTGAAGTACAATTGCTTTATATCCTCGTCATCGCCATCATCCTCCATGAATTGCTTCCAATACCAAAAATCTTATCATGTGAAAATGGAGGAGCAGAATTTCTTAAGTGCAGATGAGGCATGTAATTTTTTCTCTGATGAACAAGCACCAACTTTACAATGGTACTGTCCAGACCAGTGGAGTTAA 930 0.4054 MKRLASSDSSPALITICPSIEEQSPRNKHVYGREFQSMMLDGFEEEEVCVEEQEHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKFDAITQDNKALHNEIKELKSSLHEEEKSTVSVAVKEEITIPESGIDKHNNPSSETSIPSSESKAHLNDVGVGEASSSLFPLELKDGSSDSDSSAISSSGVLQNEQHLLLSPDSSPLKYNCFISSSSPSSSMNCFQYQKSYHVKMEEQNFLSADEACNFFSDEQAPTLQWYCPDQWS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02095 309 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Car05g02095 309 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 301 IPR045224 GO:0003700
Car05g02095 309 SUPERFAMILY Homeodomain-like 47 116 IPR009057 -
Car05g02095 309 CDD homeodomain 59 115 IPR001356 GO:0003677
Car05g02095 309 MobiDBLite consensus disorder prediction 172 198 - -
Car05g02095 309 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Car05g02095 309 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Car05g02095 309 Gene3D - 53 121 - -
Car05g02095 309 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Car05g02095 309 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Car05g02095 309 MobiDBLite consensus disorder prediction 178 196 - -
Car05g02095 309 Coils Coil 113 161 - -
Car05g02095 309 Pfam Homeobox associated leucine zipper 114 155 IPR003106 GO:0006355|GO:0043565
Car05g02095 309 SMART HOX_1 57 118 IPR001356 GO:0003677
Car05g02095 309 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02095 Car-Chr5 66164585 66167049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02095 1 309 Homeobox Transcription Factor Family AT4G40060 46.749 1.08e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car05g02095 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02095 K09338 - gmx:100777924 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02095 05 66164585 66167049 Car05g02095 05 66164585 66167049 ECH
Car06g00833 06 8194806 8197420 Car05g02095 05 66164585 66167049 ECH
Car06g00833 06 8194806 8197420 Car05g02095 05 66164585 66167049 PCT