Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02094 ATGAAGAAAACCTCTCCCCCCAACTACACCTCCCACTTCCACCGTCAACCACCGCACGCTGGAAGGTCTCCATGCCCCGTTTACCATTACCGGAAACCCGGTTTCCACTCCAACCACCGCGTCGACCGTCCTCCAGAGCGAAATCCCCCTCAACGAGTCCCCAATTTCATCCTCAAGCTCCACCTCGGCCTCCGCGCCCTCCACCGGGACAACGTCGAGTCTCTCATCAGCTTATGCAAACCTAAGCCAGATAATTTCTCTTTTTACCCCTGCGACGGCGTCGCTGCCTCCCTCAATTTCCTTCAGGCGACGGACGCTCATGACGCCGTCGTTTGGTTTTGGGAATCGCGTCTTTCCGAAGGCCATGATTTCACTCCGGAGCTGATCTCGAACGTTGTGGTTCCTTCCGACAGGATTGAACTCGAAGGTCGTCTCCGAAGCCTTTTCGTGAGCCACGTGAAGGAATTGATGGAAGGGAAGGAAGTTAAGAAGTGGGTGGAGGAATGGGAGCGTTTATCGAAGGAGATCGCGCTTGTTGCAAGCTTGTTGGGTAAACCTTTTCCAATTAGAGTGCAGCAACAGAATATTCAGAGAAAGAAAGGGCTCGATGATGAAAAGGGTTTGGTTGAAAGGAGATTAAAGGAGTTTGAGTATGCAATGGAGTGTATTTTGCACTATCTTGAAGGGGATAATAATGTGGAGAATGGTGATGGTTTTGTTCCTGTGTTTAGGTTTGGTGGAAATTTTGATTGGGGGAAGATTCACTGCTTCATTGTTAGGGAACGTCGCAGACTTCAGGAAGGATTGCCTATTTATGCTTACCGGAGGGAAATTCTTCAGCAAATACATCACCAACAGATAACAGTGTTGATTGGAGAGACTGGTTCTGGGAAGAGCACTCAGATAGTGCAGTTTCTCGCTGACTCCGGCATTGGAGCTGACGAGTCAATTGTGTGTACCCAGCCGCGCAAGATTGCTGCCAAGTCATTAGCTCAAAGGGTTCAGCAAGAAAGCAATGGGTGCTATGAAGAAAATTCAATCCAGTGTTATTCATCATTTTCATCCTGCCACAAGTTTGATTCCAGGATATCATTCATGACAGATCATTGTTTATTACAGCAGTACATGAGTGATAGGAATTTATCTGGGATCTCGTGTATCATAGTTGACGAGGCTCATGAAAGGAGCTTAAATACTGATCTGCTGTTGGCGTTGATAAAGAATTTACTTCGTAAGAGGGTTGAGATGCGGCTAATCATCATGTCTGCCACGGCTGATGCAAAGCAGCTATCTGATTATTTCTTTGGTTGTGGAATTTTTCACGTTCTTGGGAGAAACTTCCCTGTGGAAGTGAGATATGTTCCTTCTGACTATGTAGAACATTCTGGTTCTGCTGTTGTAGCCTCATACGTTTTTGATGTTGTCAAAATGGCAACCGAGATTCACAGAACAGAGAATGAAGGAACTATCCTCGCCTTTCTGACCTCACAGGCAGAAGTAGAATGGGCCTGCGAAAAGTTTGAAGCCCTATCTGCAGTTGCTCTGCCCTTACATGGAAAACTTTCGTCTGAAGAGCAATTTCATGTTTTCCAGCACTATCCTGGAAAAAGAAAAGTGATATTTTCGACCAATCTTGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGGTTGGTGAAAGATAGCCGGTTTGATCCTTCCAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTAATCAAAGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGCAGGTGCTATAGGATGTACTCTGAAGCTGATTATCGGTCTATGGAACTAAATCAAGAACCTGAGATACGAAGAGTTCATCTTGGCGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGCTCTAGCTCTATTGAGATGGCAGTCAGGAATTTAATTCAATTAGGATTCATTAAACTGAACAATAAAGTTTATGAACTAACCTATGAAGGTAGGTACTTGGCAAGGATGGGGATTGAACCTAGGCATGGTAAACTTATTCTTGGCTGTTTCCAACTTGCTTTGGGCAGAGAAGGCATTGTCCTTGCTGCCATGATGCCCAATGCTAGCAACATATTTTGCAGATTTGGTAATGAAGGTGATAAACAAAGATCTGATTGTCTCAAAGTGCAATTTTGCCATTCCGATGGTGACCTTTTTACTCTACTCTCTGTGTACAAGGAATGGGAAGCTCTGCCTCGAGATAGAAAAAATAAATGGTGTTGGGAAAATAGCATCAATGCCAAATGTATGAGGAGATGCCAAGACACAGTTTTGGAGTTAGAATCTTTCCTAGAGCGCGAACATGGCTTTGTTGTTCCAAGTTACTGGCGTTGGGATCCTCTTATGCCTTCTATTCATGATAAGAATTTGAAAAAGGTTATACTGTCCTCACTTGCTGAAAATGTAGCCATGTTCTCTGGACGCAATCAACTTGGTTATGAAGTAGCACAAACTGGACAACATGTTCAACTGCATCCATCTTGTTCCTTGCTCGTATTTGGTCAGAGGCCTAGTTGGGTGGTTTTTGGTGAGCTTCTCTCAGTGTCTAATGAATATTTGAGACTTTGTGGGAAAGGCAACAGTAATGTGCTTGGTCTTGTTTCACGTATTAGGAAAGCTTGTATGGATGAAAGAATCTTTGTTGAAGTGAATGTTGACGAGAATAACATCCAGTTATATGCCACTTCACATGATATGAATACAGCTAGTATGTTGGTAGATGATGTTTTAGAGTACGAGAAAAAGAGATTACGCTCTGAGTGCATGGAAAAATATTTGTATCATGGGTCTGGTTCCTCTTCACCTGTGGCCTTGTTTGGGCCTGGGGCTGAGATAAAGCATTTGGAACTTGAGAAGCATTCCTTGAGTGTTGATGTGTTTCACCCAAACATAAATGCAATTGATGATAAGGAGCTCCTGATGTTTTTTGAGAAGAAGACCTCAGGTTGTATTTGTGCCGTGAACAAGTTTGCAGGCACGATGAAGGATGGCGAGGATAGAGAAAAATGGGGCAGGATAACGTTTCTGTCCCCTGATGCTGCCAAAAGAGCTGCTGAGCTGGATGAAGAAGAGTTTTGTGGCTCGACCTTGAAAATACTTCTGTCACAATCAGCTACGGGAGGTGATAAAACATTTTCATTTCCTGAAGTTAAAGCTACAATTTTTTGGCCTCGCAGACCTAGCAAAGGATATGGCATAATTAAATGTGATAAAAATGATGTCAATTTCATGTTGAGGGACTTTTATAACCTTGCAATAGGAGGGAGGTATGTTCGTTGTGCGCCCAGTAATAAGTCTATGGATTGTATTATGATTAATGGGCTTGATAAAGAGCTTCCAGAAAACGAAATTTTTGATGTACTAAGATCTGCTACAAGTAGAAGGATTCTGGATTTTTTCGTGGTCAGGGGAGATGCAGTTGGAAATCCATCATGCAGTGCCTGCGAAGAGGCACTCTTTAAAGAAATTTCCCCCTTAATGCCCAAAAGAAACCCACTCATTAGTTCTTGCCGTGTTCAGGTATTTCCACCTGAGCGAAAGGATTCTTTCATGAAAGCTTTAATTAATTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGAAAATTGAAGGACAGGTGTTGCCTGGATGTCTTTCATGGCAGAAGATAAAGTGCCAGCAGATGTTTCATAGCTCCTTGATATTTCCTGCTCCAGTGTATCATGTGATTTCGGAACAACTGGAAAAAGTACTTGCAGGCTTTAACAATTTAAATGGTCTTGAGTGGAACCTAAACAGGACTGCTAATGGTTCCCATCGACTGAAGATAACCGCCAATGCCACAAAGACAGTGGCAGAAGTTAGGAGACCTCTGGAAGAATTGTCGAGGGGGAAAACCATTGACCACGACAGCCTCACCCCTGCAGCTCTATTGCTCGTGTTGTCCAGAGATGGCTTTAATCTTAAAAGCTCAATACAGCAAGAGACAAAAACTTACATTATTTATGACAGGTACAACCTGAAGTTACGGATTTATGGTTCGCCGGACAAGATTGCTTTGGCTCAGCAGAAATTAATTGAATCGCTACTGTCCCTCCATGAAAAAAAGCAGTTGATAATTCCTCTGAGAGGGAGGGACCTACCTTCTGACCTAATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTTAATGGACTAAAAGAGAAGGTACCTGGGGCAGATGTCAAACTTAACACTCGCCAACAGATAATCTCTCTTCATGGTAACAAGGAGTTGAAACCAAGAGTAGAGGAAATAACTTTGGAGATTGTGCGTTCAAATGAACATTTAGCTGAGAGACTTGACACGGGACCTAGTTGCCCAATTTGCTTGTGTGAGGTTGAAGATGGATATCAACTTGAAGGTTGTCGTCATTTGTTTTGCCGTCTGTGCCTGGTGGAGCAATGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATATGTTGTGCTCACCAGGGCTGTGGAGATTCTATTCTGCTTACAGATTTGAGAACTCTCCTGTCAAATGAGAAGTTGGACGAACTATTCAGGGCATCTTTGGGAGCTTTTGTAGCTTCGAGTTCGGGAACTTATAGGTTTTGCCCGTCTCCTGACTGCCCCTCAATCTATCGGGTTGCAGATCCCGACACAGCTAGCGAGCCATTTGTTTGTGGAGCTTGTTATTCAGAGACTTGTACCAAATGCCACTTAGAGTATCATCCATACCTTTCTTGCGAGAGATACCGTGAATTCAAGGATGACCCCGACTCATCTCTGAGGGAGTGGTGCAAAGGGAAAGATCAAGTCAAGAGCTGTTTCGCTTGTGGGCAAATAATTGAGAAGGTTGATGGGTGCAATCACGTTGAATGCAAGTGCGGGAAACATGTCTGCTGGGTTTGCTTGGAGATCTTTTTAAGAAGTGACGAATGTTATGATCATTTGAGAACGGTACACATGACCATATAA 5073 0.4358 MKKTSPPNYTSHFHRQPPHAGRSPCPVYHYRKPGFHSNHRVDRPPERNPPQRVPNFILKLHLGLRALHRDNVESLISLCKPKPDNFSFYPCDGVAASLNFLQATDAHDAVVWFWESRLSEGHDFTPELISNVVVPSDRIELEGRLRSLFVSHVKELMEGKEVKKWVEEWERLSKEIALVASLLGKPFPIRVQQQNIQRKKGLDDEKGLVERRLKEFEYAMECILHYLEGDNNVENGDGFVPVFRFGGNFDWGKIHCFIVRERRRLQEGLPIYAYRREILQQIHHQQITVLIGETGSGKSTQIVQFLADSGIGADESIVCTQPRKIAAKSLAQRVQQESNGCYEENSIQCYSSFSSCHKFDSRISFMTDHCLLQQYMSDRNLSGISCIIVDEAHERSLNTDLLLALIKNLLRKRVEMRLIIMSATADAKQLSDYFFGCGIFHVLGRNFPVEVRYVPSDYVEHSGSAVVASYVFDVVKMATEIHRTENEGTILAFLTSQAEVEWACEKFEALSAVALPLHGKLSSEEQFHVFQHYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDSRFDPSSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRMYSEADYRSMELNQEPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSSSSIEMAVRNLIQLGFIKLNNKVYELTYEGRYLARMGIEPRHGKLILGCFQLALGREGIVLAAMMPNASNIFCRFGNEGDKQRSDCLKVQFCHSDGDLFTLLSVYKEWEALPRDRKNKWCWENSINAKCMRRCQDTVLELESFLEREHGFVVPSYWRWDPLMPSIHDKNLKKVILSSLAENVAMFSGRNQLGYEVAQTGQHVQLHPSCSLLVFGQRPSWVVFGELLSVSNEYLRLCGKGNSNVLGLVSRIRKACMDERIFVEVNVDENNIQLYATSHDMNTASMLVDDVLEYEKKRLRSECMEKYLYHGSGSSSPVALFGPGAEIKHLELEKHSLSVDVFHPNINAIDDKELLMFFEKKTSGCICAVNKFAGTMKDGEDREKWGRITFLSPDAAKRAAELDEEEFCGSTLKILLSQSATGGDKTFSFPEVKATIFWPRRPSKGYGIIKCDKNDVNFMLRDFYNLAIGGRYVRCAPSNKSMDCIMINGLDKELPENEIFDVLRSATSRRILDFFVVRGDAVGNPSCSACEEALFKEISPLMPKRNPLISSCRVQVFPPERKDSFMKALINFDGRLHLEAAKALEKIEGQVLPGCLSWQKIKCQQMFHSSLIFPAPVYHVISEQLEKVLAGFNNLNGLEWNLNRTANGSHRLKITANATKTVAEVRRPLEELSRGKTIDHDSLTPAALLLVLSRDGFNLKSSIQQETKTYIIYDRYNLKLRIYGSPDKIALAQQKLIESLLSLHEKKQLIIPLRGRDLPSDLMKQVVKNFGPDLNGLKEKVPGADVKLNTRQQIISLHGNKELKPRVEEITLEIVRSNEHLAERLDTGPSCPICLCEVEDGYQLEGCRHLFCRLCLVEQCESAIKNQGSFPICCAHQGCGDSILLTDLRTLLSNEKLDELFRASLGAFVASSSGTYRFCPSPDCPSIYRVADPDTASEPFVCGACYSETCTKCHLEYHPYLSCERYREFKDDPDSSLREWCKGKDQVKSCFACGQIIEKVDGCNHVECKCGKHVCWVCLEIFLRSDECYDHLRTVHMTI 1690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02094 1690 ProSitePatterns Zinc finger C2H2 type domain signature. 1666 1687 IPR013087 -
Car05g02094 1690 PANTHER ATP-DEPENDENT RNA HELICASE 30 860 - -
Car05g02094 1690 PANTHER ATP-DEPENDENT RNA HELICASE 897 1620 - -
Car05g02094 1690 SMART ha2_5 659 755 IPR007502 GO:0004386
Car05g02094 1690 ProSitePatterns Zinc finger RING-type signature. 1498 1507 IPR017907 -
Car05g02094 1690 Pfam Helicase conserved C-terminal domain 481 598 IPR001650 -
Car05g02094 1690 Pfam IBR domain, a half RING-finger domain 1558 1614 IPR002867 -
Car05g02094 1690 Pfam DEAD/DEAH box helicase 275 430 IPR011545 GO:0003676|GO:0005524
Car05g02094 1690 Gene3D - 621 664 IPR042035 -
Car05g02094 1690 SUPERFAMILY RING/U-box 1481 1553 - -
Car05g02094 1690 Gene3D - 259 445 IPR027417 -
Car05g02094 1690 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 279 443 IPR014001 -
Car05g02094 1690 SUPERFAMILY RING/U-box 1564 1619 - -
Car05g02094 1690 Gene3D - 1610 1688 - -
Car05g02094 1690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1479 1558 IPR013083 -
Car05g02094 1690 ProSiteProfiles TRIAD supradomain profile. 1478 1690 IPR044066 -
Car05g02094 1690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 776 IPR027417 -
Car05g02094 1690 SUPERFAMILY RING/U-box 1636 1684 - -
Car05g02094 1690 SMART ibrneu5 1549 1614 IPR002867 -
Car05g02094 1690 SMART ibrneu5 1615 1679 IPR002867 -
Car05g02094 1690 CDD SF2_C_RHA 447 607 - -
Car05g02094 1690 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 823 889 IPR011709 -
Car05g02094 1690 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 473 639 IPR001650 -
Car05g02094 1690 Pfam Helicase associated domain (HA2) 660 754 IPR007502 GO:0004386
Car05g02094 1690 PANTHER ATP-DEPENDENT RNA HELICASE DEAH12, CHLOROPLASTIC-LIKE 30 860 - -
Car05g02094 1690 PANTHER ATP-DEPENDENT RNA HELICASE DEAH12, CHLOROPLASTIC-LIKE 897 1620 - -
Car05g02094 1690 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 385 394 IPR002464 -
Car05g02094 1690 SMART ultradead3 267 452 IPR014001 -
Car05g02094 1690 Gene3D - 446 618 IPR027417 -
Car05g02094 1690 MobiDBLite consensus disorder prediction 1 24 - -
Car05g02094 1690 SMART helicmild6 501 599 IPR001650 -
Car05g02094 1690 CDD DEXHc_RHA-like 286 442 - -
Car05g02094 1690 ProSiteProfiles Zinc finger RING-type profile. 1482 1524 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02094 Car-Chr5 66144229 66151357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02094 1497 1675 C3H Transcription Factor Family AT2G31770 26.738 5.14e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02094 K12818 - gmx:100810008 2544.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02094 05 66144229 66151357 Car05g02094 05 66144229 66151357 ECH