Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02087 ATGGGCCTCTCAAATTATCCTTGTGCAGCAGAAGGTGTGTTACCTGTGCTTGTGATGAACACGGTTTTGTATGTGGCTTTATTAAAGAACATATTCAAATCCATGCTTCAAGTAGTTGGTTGCACAAGAACATCAATCACTAATTCATCTTATTCACCAAATATTgaggaagaagaagaagaacaagaGTCCCAATTAGAAGAGAGGGAAAGGAGGGTGTCAATAAGACAGTACAAGTCATTGTGCAACAAGATAGGAAGAAGTGGAAGTGGATGTGGATGGAGAGAGTGTTGTTGTGTGTGTTTGTGTGGTTTTGAAGCAAATCAGGAGGTGAGTGAGTTGGCTTGCAAGCATTTCTTCCACAGAGTTTGCTTAGATAAATGGTTTGATAACAAACACAGTACTTGTCCTTTATGTCGTTCCATGGACTAG 432 0.3796 MGLSNYPCAAEGVLPVLVMNTVLYVALLKNIFKSMLQVVGCTRTSITNSSYSPNIEEEEEEQESQLEERERRVSIRQYKSLCNKIGRSGSGCGWRECCCVCLCGFEANQEVSELACKHFFHRVCLDKWFDNKHSTCPLCRSMD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02087 143 SMART ringv_2 97 140 IPR011016 GO:0008270
Car05g02087 143 SUPERFAMILY RING/U-box 97 141 - -
Car05g02087 143 PANTHER - 1 142 IPR044249 -
Car05g02087 143 Pfam Ring finger domain 98 140 IPR001841 -
Car05g02087 143 Coils Coil 52 72 - -
Car05g02087 143 PANTHER F21J9.24-RELATED 1 142 - -
Car05g02087 143 SMART ring_2 98 139 IPR001841 -
Car05g02087 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 143 IPR013083 -
Car05g02087 143 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02087 1 141 C3H Transcription Factor Family AT2G04240 34.211 3.12e-22 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02087 K16285 - tcc:18609579 174.096