Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02080 ATGGAAATGGATTACGCTTCAGAGTTTTCTATGGATCGACGTCCTCGAAAAAGACCTAAATTGGCTTGGGATCTTCCTCAAACCCACTCAAAGGCTCATTCGGGGATGTATTGTGGACAAGAGTTTGCTAATGTGACAACAAGCTATGGAACACTGAGGGTACTTCCGGACCATGGTGGTCTATCAATAAATGGATTGGCTGAAAAAGGTTCTCCCCAATGGCGAGATGATGACAAAGATGGACATTACGTGTTTGCGCTTGGAGAAAATTTAACTTCTCGGTATAAGATCCTCAGGAAAATTGGTGAAGGGACATTTGGTCAGGTTTTGGAATGTTGGGATAGAGAAATGAGGGAGCTGGTTGCCATTAAAGTTGTGCGAAGTGTTAAAAAATATCGTGAAGCAGCAATGTTAGAAGTTGATGTACTTCAGTTGCTTGGGAAGTATGACAGGAATGGCAGTCGCTGTGTTCAAATTCGCAACTGGTTTGACTACCGGAACCATATTTGTATTGTATTTGAGATGCTTGGACCAAGCTTATATGATTTTCTCCGGAAGAACAATTATCGCCCATTTCCGGTTGATCTTGTACGTGAGCTAGGAAGACAATTGTTGGAATGTGTAGCATTTGTGCATGATCTGCGCCTTATCCATACTGACTTGAAACCTGAAAATATACTTTTTATTTCCCCGGAATATGTAAAAGTGCCTGATTACAAGGTCATGTTCCGGTCACCAAGAGAAGGAACCTCTTATAAGAGACTGCCAAAGTCAAGTGCTATTAAGGTTATTGATTTTGGTAGTACTGCCTATGAGCACCAAGATCACAACTATATTGTCTCTACAAGGCATTATAGGGCACCTGAGGTTATTCTTGGACTTGGTTGGAGTTTTCCTTGTGATATATGGAGTGTTGGCTGCATTTTGGTCGAGTTGTGCTCGGGAGAAGCCCTATTTCAGACGCATGAGAATTTAGAGCATCTAGCCATGATGGAGAGGGTTTTAGGCCCAATACCTCAGCACATGTTGAAAAGAGCAGACCGCCCCGCCGAGAAGTATGTCAGAAGGGGTAGACTTAACTGGCCTGAAGGAGCAGTCTCTCGAGAAAGCATCAAGGCTGTCTTGAAACTACCCCGTCTTCCTAATCTCGTGATGCAGCATGTGGATCACTCGGCCGGAGATCTTCTTGATCTCTTGCAGGGTCTACTTCGGTTTGACCCCATCAGCAGGCTGAAGGCTCATGAAGCGCTCAGGCATCCCTTTTTTACTGGGGAACATTACCCAAGGTTTTAA 1293 0.4408 MEMDYASEFSMDRRPRKRPKLAWDLPQTHSKAHSGMYCGQEFANVTTSYGTLRVLPDHGGLSINGLAEKGSPQWRDDDKDGHYVFALGENLTSRYKILRKIGEGTFGQVLECWDREMRELVAIKVVRSVKKYREAAMLEVDVLQLLGKYDRNGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVRELGRQLLECVAFVHDLRLIHTDLKPENILFISPEYVKVPDYKVMFRSPREGTSYKRLPKSSAIKVIDFGSTAYEHQDHNYIVSTRHYRAPEVILGLGWSFPCDIWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPIPQHMLKRADRPAEKYVRRGRLNWPEGAVSRESIKAVLKLPRLPNLVMQHVDHSAGDLLDLLQGLLRFDPISRLKAHEALRHPFFTGEHYPRF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02080 430 SUPERFAMILY Protein kinase-like (PK-like) 82 428 IPR011009 -
Car05g02080 430 Pfam Protein kinase domain 95 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02080 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Car05g02080 430 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 429 - -
Car05g02080 430 CDD PKc_CLK 82 422 - -
Car05g02080 430 ProSiteProfiles Protein kinase domain profile. 95 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02080 430 ProSitePatterns Protein kinases ATP-binding region signature. 101 131 IPR017441 GO:0005524
Car05g02080 430 PANTHER KINASE AFC1 1 429 - -
Car05g02080 430 SMART serkin_6 95 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02080 430 Gene3D Transferase(Phosphotransferase) domain 1 149 422 - -
Car05g02080 430 Gene3D Phosphorylase Kinase; domain 1 82 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02080 Car-Chr5 66038509 66042615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02080 95 422 Core Cell Cycle Gene Families AT1G76540 25.959 1.43e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Car05g02080 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02080 K08287 - qsu:112037155 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02080 05 66038509 66042615 Car05g02080 05 66038509 66042615 ECH