Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02074 ATGGGAGATACCGCTATCATTCTCCGCTTCCAAGGTACCTTAGACCCTACTGCTCAAGAGTTCACTCCAAACCACATtcccttatccttctctcttgctcttccctatccctatccctatccctaccctcactacgccgccactcctcctccccatctctccccctcacccacccgctcccttctccttactcccgtccctcccaccgcctctcactctGACCTCCGAAAAGATCTTCAATCTTTCGGAGACGTCAGAGCACTTCATACTGAGTCCCTCCCTTACGGAATCGTAACAGTTCATTACTGCGACCTTCGACACGCTCAAACGGCTTTTACCGCTATCCGTACTCACCATGTTCACTCTGTTTCGTTTTATAATCCCCTTTGCCCCCAATTTAATACTTCCCCCCCGCCTCCTGGTATTGTCGCCGGTTCTCCCCTTTGGGCTAACTACATCCTCCCTGACGCTCAGAATCAAGGAACCCTCGTCGTTTTCAACTTGGACGCCGACGTTTCCTCTCACCATCTTCGACAAGTTTTCGAGCCTTTTGGACCCATAAAGGAAGTGAGGGACACCCTAGGGAACAAAAAGAATGAAAGATTTGTGGAATTTTTTGACATAAGAGATGCTGCGAAAGCTTTGAAACAAATGAATGGCAAAGAAATTAATGGGAAATCTGTTTCTATTGAGTTTAGTAAAGTTGGTTTTGGAAGAAAGTTTTATCATTCAGCTTATCCCTCTCATGCATCCAATAAACCTCTTCACTTCAACATTAATCCACCTCTCTTACCACCAACACCACCACACTTTACTCATCGTTTTGATCCTCGTTACCATTCACCTCAACCGCCACAATTTTCTCCCAATAATTTCACATGTAACCGGGGAAGTACCAATAATAGGCTTGAAGAGCAGAATTCTCCTAGGAGGAATTTTGTTAGAAGCAACTCAATGGACACTATGAGTAACAGGACATGGAATTGGAGGGGAAAGCAAGGAAAGAAACATGAAACTCGGTTTGTGATCAAAGAAGATGCCATTGTTGAATCCAGTTTCAGAGACTCCCGAACAACTGTCATGATAAAAAACATACCCAACAAATACAGTCAGAAGTTACTGTTGAACATGTTGGACAACCACTGCATACACTGCAACGAGCAGATAGGAGACGGCGATGACCAGCCTCTATCCTCCTACGACTTCGTCTACCTTCCTATTGATTTCAAGAACAAATGCAACGTGGGATACGGGTTTGTGAATATGACATCTCCGGAGGCAACGCTGAGACTCTACAAGGCCTTCCATCACCAACATTGGGAGGTGTTTAACTCGAGAAAAATATGCCAAATCACCTACGCCAGAGTTCAGGGATTGGAAGCTTTGAAAGAACATTTTAAGAACTCAAAGTTCCCGTGCGAGATGAAGCATTACCTACCAGTGGTGTTTTCACCAGCTCGAGATGGGAGAAAAATGACGGAGCCAATTCCAGTAGTGGGGATGGTGAACTCTCCTGTAGATGAAGAGATGAAAAGTGAGGGCGTGGGAGATAATGACGAAAATAGTAAAGCAGCAGAAGAAGCTAAGTGA 1590 0.4019 MGDTAIILRFQGTLDPTAQEFTPNHIPLSFSLALPYPYPYPYPHYAATPPPHLSPSPTRSLLLTPVPPTASHSDLRKDLQSFGDVRALHTESLPYGIVTVHYCDLRHAQTAFTAIRTHHVHSVSFYNPLCPQFNTSPPPPGIVAGSPLWANYILPDAQNQGTLVVFNLDADVSSHHLRQVFEPFGPIKEVRDTLGNKKNERFVEFFDIRDAAKALKQMNGKEINGKSVSIEFSKVGFGRKFYHSAYPSHASNKPLHFNINPPLLPPTPPHFTHRFDPRYHSPQPPQFSPNNFTCNRGSTNNRLEEQNSPRRNFVRSNSMDTMSNRTWNWRGKQGKKHETRFVIKEDAIVESSFRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDGDDQPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEATLRLYKAFHHQHWEVFNSRKICQITYARVQGLEALKEHFKNSKFPCEMKHYLPVVFSPARDGRKMTEPIPVVGMVNSPVDEEMKSEGVGDNDENSKAAEEAK 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02074 529 PANTHER RNA BINDING PROTEIN 37 517 - -
Car05g02074 529 SUPERFAMILY RNA-binding domain, RBD 47 120 IPR035979 GO:0003676
Car05g02074 529 Gene3D - 155 238 IPR012677 -
Car05g02074 529 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 235 IPR000504 GO:0003723
Car05g02074 529 MobiDBLite consensus disorder prediction 510 529 - -
Car05g02074 529 MobiDBLite consensus disorder prediction 507 529 - -
Car05g02074 529 Pfam RNA recognition motif 2 357 467 IPR007201 -
Car05g02074 529 MobiDBLite consensus disorder prediction 279 317 - -
Car05g02074 529 CDD RRM3_EAR1_like 357 458 IPR034458 -
Car05g02074 529 SMART rrm1_1 60 126 IPR000504 GO:0003723
Car05g02074 529 SMART rrm1_1 162 231 IPR000504 GO:0003723
Car05g02074 529 MobiDBLite consensus disorder prediction 285 317 - -
Car05g02074 529 PANTHER TERMINAL EAR1-LIKE 1 37 517 - -
Car05g02074 529 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 228 IPR000504 GO:0003723
Car05g02074 529 SUPERFAMILY RNA-binding domain, RBD 162 439 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02074 Car-Chr5 65995257 65998208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02074 163 289 Eukaryotic Initiation Factors Gene Family AT4G34110 28.030 2.50e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02074 05 65995257 65998208 Car05g02074 05 65995257 65998208 ECH