Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02067 ATGGCATTTGCAATGTCACTAATGTTGCAGTTCTTGTTTCTTGCCCCGGCTTTGATATACTCTTCTCCAGTTGAAGATCCTGAATCAGTGGTCCAACAAGTGCAGAAGAGCATCATTGAGAATGAGCAGAGAAGAAAATTGGGTTACTATTCTTGTGGTACAAGCAACCCAATTGATGATTGTTGGAGATGTGACCCAAATTGGGAAATGAACCGCAAGCGTCTAGCAGAATGTGCTATTGGATTCGGTAGAAAAGCCATTGGTGGAAAAGATGGTAAATTTTACATGGTCATTGACTCAAGTGATGACCCTGTAAATCCCAAGCCAGGAACATTAAGACATGGTGTTATCCAACAAGAGCCTTTATGGATCATTTTCGAACACGACATGGTGATTAACCTTAAAATGGATCTCCTCGTTAATTCCTATAAAACAATTGATGGTAGAGGTGCAAATGTCCACATTGCTGAAGGGCCTTGTATTAGAGTACAACAAAAGAGCAACATTATAATTCATGGCATACACATTCATCATTGTGTAAGAGGTGGAAGTGGCTATGTGAGTGATTCTCCTAATCATCGTGTAATGAAAACTAGATCGGATGGTGATGGGATTACAATCTTTGGTTCGACACATGTTTGGGTGGATCATTGTTCTTTGTCAAATTGTTTTGATGGTTTGATTGATGTTGTTCATGGATCAACGGCTATTACTATTTCTAATAATTACATGACACACCATAATAAAGTTATGCTTTTGGGACATAGTGATTCCTATGATGAGGACAAAATAATGCAAGTTACCATAGCTTTTAACCATTTTGGTGAAGGGCTTGGGGGAAGAATGCCAAGATGTAGGTTCGGATACTTTCATGTAGTTAACAATGATTACACGCATTGGCAACAATACGCAATTGGTGGAAGTTCATCTCCAACTATTTTCAGCCAAGGCAACAGATTTCTAGCTCCAGAAGATGATGACCACAAAGAGATCACAAAGCACTTCGATTCATCAGATGGTGAGTGGAAGAACTGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGTGCGTTCTTCACATCGTCTGGAGCGGGAGCATCTTCTTCTACATATGCCAAAGCCTCAAGTATGGCAGCAAGACCACCTATGCTTGTGGCTTCAATGACAGCAGGGGCTGGAGCACTTAGATGCAAAAAGGGTTACCATTGCTACTAG 1218 0.4064 MAFAMSLMLQFLFLAPALIYSSPVEDPESVVQQVQKSIIENEQRRKLGYYSCGTSNPIDDCWRCDPNWEMNRKRLAECAIGFGRKAIGGKDGKFYMVIDSSDDPVNPKPGTLRHGVIQQEPLWIIFEHDMVINLKMDLLVNSYKTIDGRGANVHIAEGPCIRVQQKSNIIIHGIHIHHCVRGGSGYVSDSPNHRVMKTRSDGDGITIFGSTHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYDEDKIMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPEDDDHKEITKHFDSSDGEWKNWNWRSEGDLMLNGAFFTSSGAGASSSTYAKASSMAARPPMLVASMTAGAGALRCKKGYHCY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02067 405 SMART amb_all 129 326 IPR002022 -
Car05g02067 405 PANTHER PECTATE LYASE 18-RELATED 3 401 IPR045032 GO:0030570
Car05g02067 405 SUPERFAMILY Pectin lyase-like 32 398 IPR011050 -
Car05g02067 405 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Car05g02067 405 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Car05g02067 405 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Car05g02067 405 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Car05g02067 405 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Car05g02067 405 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Car05g02067 405 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Car05g02067 405 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Car05g02067 405 PANTHER PECTATE LYASE 3 401 - -
Car05g02067 405 Gene3D - 55 397 IPR012334 -
Car05g02067 405 Pfam Pectate lyase 138 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02067 Car-Chr5 65917708 65920231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02067 1 404 Polysaccharide Lyase AT5G63180 67.734 0.0 565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02067 05 65917708 65920231 Car05g02067 05 65917708 65920231 ECH
Car05g02067 05 65917708 65920231 Car05g01667 05 61508310 61510693 ECH