Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02066 ATGGCacttccactctcattcatgctactctttctactactacttctacttctTGTACCTTCCTTCATTCACTCATCCCCACTTCAAGATCCTGAATTAGTAGTCCAAGATGTACAAAAGAGTATTAATGGTTCAAGGAGAAACTTAGCATTTCTTTCTTGTGGAACGGGCAACCCAATTGATGATTGTTGGAGATGCGACCCAAATTGGGAAAAGAATCGTAAGCGATTAGCAGATTGTGCCATTGGATTTGGTAAACATGCAATTGGAGGCAGAGATGGTAAAATCTATGTAGTAACTGACCCTGGTGATCACCCTGTGAAACCAAAGCCAGGAACATTAAGATATGGTGTTATTCAAGAGGAACCATTGTGGATAATATTCAAGCGTGACATGGTGATTAAGCTTAAGCAAGAGTTAATGATGAATTCTTTCAAGACTATTGATGGTAGAGGAACAAATGTACACATTGCAGGTGGACCTTGTATTACTATACAATTTGTGACAAATATTATCATTCATGGGATTAATATACATGATTGTAAAAGAGGTGGGAATGCTTATGTCAGAGATTCAACTACACATTATGGTTTTAGGACACTTTCTGATGGTGATGGTGTGTCAATTTTTGGTGGGAGTCATGTTTGGGTGGATCATTGTTCTCTTTCTAATTGTCGTGATGGATTAATTGATGCTATTCATGGATCTACAGCTATTACTATTTCTAATAATTTTATGACTCATCATAATAAGGTTATGCTTTTGGGTCATAGTGATAGTTTCACTAGAGATAAAAATATGCAAGTTACCATTGCTTTTAACCATTTTGGAGAAGGACTAGTTCAAAGAATGCCAAGATGTAGGCATGGATACTTCCATGTGGTGAACAATGACTACACACATTGGCAAATGTATGCCATAGGAGGGAGTGCTGCTCCAACCATTAACAGCCAAGGCAATAGATTTCTTGCTTCTAATGACAATACCTTCAAAGAGGTGACAAAGCGTGAGATTGCACCACAAAGCCAATGGAAGAATTGGAATTGGAGGTCAAGTGGTGATTTGATGTTAAATGGTGCATTCTTTAGAGCATCAGGAAcaggtgcatcttcaagctatgcaagagcatctagtttggcaGCAAAACCATCTTCTTTGGTTGCTTCTATCACTGCATCAGCTGGATCACTAAACTGCAGAAAGGGTTCTCGCTGCTGA 1218 0.3571 MALPLSFMLLFLLLLLLLVPSFIHSSPLQDPELVVQDVQKSINGSRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKHAIGGRDGKIYVVTDPGDHPVKPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGTNVHIAGGPCITIQFVTNIIIHGINIHDCKRGGNAYVRDSTTHYGFRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNFMTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLASNDNTFKEVTKREIAPQSQWKNWNWRSSGDLMLNGAFFRASGTGASSSYARASSLAAKPSSLVASITASAGSLNCRKGSRC 405
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car05g02066 405 PANTHER PECTATE LYASE 8 402 - -
Car05g02066 405 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Car05g02066 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Car05g02066 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Car05g02066 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Car05g02066 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Car05g02066 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Car05g02066 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Car05g02066 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Car05g02066 405 Pfam Pectate lyase 137 322 IPR002022 -
Car05g02066 405 Gene3D - 57 398 IPR012334 -
Car05g02066 405 SMART amb_all 131 328 IPR002022 -
Car05g02066 405 PANTHER PECTATE LYASE 18-RELATED 8 402 IPR045032 GO:0030570
Car05g02066 405 SUPERFAMILY Pectin lyase-like 41 399 IPR011050 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Car05g02066 Car-Chr5 65908132 65910608 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02066 5 405 Polysaccharide Lyase AT5G63180 75.369 0.0 630