Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02054 ATGGATAATGGTTGCTTCACTTCCCCTAGACGCGATTTTCCTAATGGTCTACGAGTTCTTGTTGTTGATGATGATCCAACATGGCTCAAGATCCTTGAAAAGATGCTCAAAAAGTGCAATTATGAAGTGACTACATGTTGCTTAGCAAGACAAGCTTTAAACTTGCTTCGCGAAAGGAAAGACGGATACGATATAGTGATCAGCGACGTAAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGAGAAACAAGCAGAGTGATGAAAGGTGTTCAGCACGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAGCTGCGAAATATATGGCAACATGTCTTACGAAAGAGGATACACGAGGTTAGAGAATTTGAAAATTTTGAGAGTTTTGAGAGCATTCACTTGATGAGAAATGGATCAGAGATGTCCGAGGAAGCTAACATGTTTGCTTTAGAAGATATGACCTCAACGAAGAAAAGGAAAGATGTAGACAACAAACACGACGACAAAGAATTTTCGGATCCGTCTTCCTCAAAAAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAGGCAGTAAATCTGATTGGATTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCGTGGCTGACTAGAGAGAATGTTGCCAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGATAACGAACAAAAATCTTCCTCAAGTGGAATGAAGCATTCTGATTTACCTTCAAAAGATGTAGGAAGTTTTGGTTTTCCGAACTCAGCAAACATGAAGCATTCTGATTTACCTTCAAAAGATGTAGGAAGTTATGGTTTTCCGAACTCAGCAAACAAGCAACAAAATGATGTTCCAATTGACAGATACAACTATTTAGAAGGAACCATACAACATAAGAACATGGAAACTAAAAGCCATGAAGGTATTCCCAAAGTAACAGTTCCACATTCCACCACCGCAGAAAAAGTAAGAGCTATCACTGGTAACATCACTGATGCAGGGATTACACATAATCGACCTTTTGCCCCTCTCGACTCAGAAGGAAAATGTGCCGTAATTGATTGCACGTTGTCAACACAGTATTCTTGGACTGAAATTCCAAAAAGACAGCTCAAAGAGGAACAAGAGTCACTTGTTCATCTTGAGGATAACTGCAACATGTTGCCCTTACAAGGTAAGAAGCATCACATTCAAGTTGATCAATCACAGTCAATTACTTCAATTAGTTCCACTCCCTCTACAAAGGAGCAAGAGGTTGATGCAATTATCAAAACAAAACATTTGCTTGCTGATTACAAGAAAGATTACACTAGTTCAGTGAGTTCAAAAAGAAGTGTAGTGGACACTTTTCCTTTCCAACCTGGAAGCCTTATGATGAATGATCAACCTTCACAGCCCATTTCCACTTCTAATTTCGGCTTAAAAACACAGTCATCTAATCTTGGTTGCATTCCTGATCTAGAGTCTTACCAAAGAAGCCTACTTTTGGTAGGTGAGGCTGCTTCGGCGCCTTTGGATGAGGACTTATATTTCTATTGGCATAATATGAACTTTGGTCAGTCGAATATAGGGATGTCTGAGTATTATGATCCTGGGCTTCTCACAGAAGTTCCAACTCACTTATATGATTCAACAGATTATTCAGTAATTGATCAAGGTCTATTCATAGCATGA 1773 0.3926 MDNGCFTSPRRDFPNGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARQALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEVREFENFESFESIHLMRNGSEMSEEANMFALEDMTSTKKRKDVDNKHDDKEFSDPSSSKKARVVWSVDLHQKFVKAVNLIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKDNEQKSSSSGMKHSDLPSKDVGSFGFPNSANMKHSDLPSKDVGSYGFPNSANKQQNDVPIDRYNYLEGTIQHKNMETKSHEGIPKVTVPHSTTAEKVRAITGNITDAGITHNRPFAPLDSEGKCAVIDCTLSTQYSWTEIPKRQLKEEQESLVHLEDNCNMLPLQGKKHHIQVDQSQSITSISSTPSTKEQEVDAIIKTKHLLADYKKDYTSSVSSKRSVVDTFPFQPGSLMMNDQPSQPISTSNFGLKTQSSNLGCIPDLESYQRSLLLVGEAASAPLDEDLYFYWHNMNFGQSNIGMSEYYDPGLLTEVPTHLYDSTDYSVIDQGLFIA 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02054 590 MobiDBLite consensus disorder prediction 175 195 - -
Car05g02054 590 CDD REC_typeB_ARR-like 19 133 - -
Car05g02054 590 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Car05g02054 590 SUPERFAMILY CheY-like 15 145 IPR011006 -
Car05g02054 590 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Car05g02054 590 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Car05g02054 590 PIRSF RR_ARR_type-B 2 559 IPR017053 GO:0003677|GO:0003700|GO:0009736
Car05g02054 590 SMART REC_2 17 129 IPR001789 GO:0000160
Car05g02054 590 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 564 - -
Car05g02054 590 Gene3D - 17 194 - -
Car05g02054 590 Gene3D - 195 258 - -
Car05g02054 590 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 564 IPR045279 GO:0009736
Car05g02054 590 MobiDBLite consensus disorder prediction 304 318 - -
Car05g02054 590 MobiDBLite consensus disorder prediction 260 318 - -
Car05g02054 590 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Car05g02054 590 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02054 Car-Chr5 65789743 65793652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02054 13 265 Response Regulator Gene Family AT2G25180 55.859 4.49e-81 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Car05g02054 Response_reg 5.5e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02054 - K14491 gmx:100797421 853.588