Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02032 ATGATGGATGTTTCTGAGGTTGAAGAAAATTTCTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGAAGTCTTTCTGCAATATATTGTAAAATATTGTCAATATTTCCTTCATTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCGCTGCATGTAGCCTTAGAGAAGGCGAAGAATGTACTTCAGCACTGCTCAGAGTCTAGTAAACTTTACTTGGCTATAACTGGAGATTCCGTTCTTCTAAAATTTGAGAAGGCTAAGTGTGCTCTTGTAGATAGTCTTAAACTGGTGGAAGATATCGTTTCTCAATCCATTGGGTGTCAGATTGATGAAATTGTGAACGAAATTGCTGGTACGGTGTTTGCGCTTGATCCAACAGAGAAGCAAGTCGGAGATGATTTAATTGCATTGCTTCAGCAGGGGAGAAAATTTAACGACTCTAATGACAGTAGCGAACTTGAGTGTTTTCACCTTGCTGCTACTAGACTTGGAATTACATCTTCCAGAGCAGCCCTCACTGAAAGAAGAGCTCTAAAAAAACTCATTGAAAGGGCTCGCACCGAGGAAGACAAGAGAAAGGAATCAATTATTGCATTTCTTTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTTCAAAACCTTTCGAGGACGGTGTTCGTGGTGGTCAATGTCATGGCTTTGATAGACAGATATCAAAACTCGGTTCCTTTAATTTTAAGCCGAACAATAGGAAATCGGGACAGATGCTCCTTCCACCTGAAGAGTTAAGGTGTCCAATTTCTCTGCAACTTATGAGTGATCCTGTTATAATCGCATCTGGGCAGACATATGAAAGAGTTTGTATAGAAAAATGGTTCAATGACGGGCACAACACCTGCCCAAAGACTCAACAAAAACTTGCACATCTTTCTCTGACTCCTAATTACTGTGTCAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAACGGAATTCCTATTCCAGAAGGCCCTCCCGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGATACCGAATCCACAAATTCAAGATCTATAAACAGTGTCAACTCTTGCAAATCAAAGGGTGTCAAAGTTGTTCCTCTTGAAGAGAATTGCATCTCAGAGCAAACTGAGGGAAATGCAACTGAAAGTTTGTCCGTACAAGAAGAGGAAGGCGGTGAACAGTATCTTAGTTTTCTGAAAGTATTGACCGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTAGTAGAGCGGTTAAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGATATTTATGGGGGCTAATGGATTTGTTGAAGCCCTTTTTCAGTTTCTGCAATCAGCTGTGCGTGAAGGGAATGCGATGGCTCAGGAAAATGGAGCTATGGCTCTGTTCAACTTGGCTGTGAATAACAACAGAAATAAGGAAGTTATGATATCAACAGGAATCATATCATTGTTGGAGGAAATGATATCAAGCTCCAATCTGTACGGTTGTTCAACCGCTCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCAAAGCACATGATTGGCACAAGTCAGGCCGTGCAGTTCCTAATCAAGATGCTTCAAGCTAAAACCGAAGTCCAGTGCAAGCTAGATGCCCTGCACGCACTCTATAATATCTCTACCGTACCCTCAAATATTTCAAACCTCCTTTCATCAGGCATCATTGACGGCCTACAATCCCTTCTTGTAGGCCAAGCTGATTGCATGTTGACAGAAAAATGCATAACCGTTTTGGTTAATTTGGCCGTTTCTCATGTAGGGAGAGAGGAAATGATTTTGAATCCTGAACTGATAAGCACATTGGCTTCTATATTAGATACTGGCGAAGCCATAGAGCAAGAACAAGCTGTGTCTTGTCTCCTGATATTATGCAACAGGAGTGAAAAATGTTGTGAGATGGTTCTGCAAGAAGGCGCTATACCCGCGTTGGTGTCGATATCGGTGAATGGAACTTCAAGAGGAAGAGAGAAAGCTCAGAAACTATTGATGCACTTCCGAGAGCAGCGGCAGCGAGACCTTTCACCTGCTAAGACTCAACAATGTTCACCTGAAGTTGGTGATTTGTGCATGCCTCCTCAAGAAACGAAACCGCTATGTAAATCTATATCCAGAAGAAGAGTGGGGAAAGCTTTAAGTTTTCTATGGAAAAGCAAGAGCTATTCTGTTTATCAATGTTAA 2301 0.4168 MMDVSEVEENFFAASDAKLHGEMCRSLSAIYCKILSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSESSKLYLAITGDSVLLKFEKAKCALVDSLKLVEDIVSQSIGCQIDEIVNEIAGTVFALDPTEKQVGDDLIALLQQGRKFNDSNDSSELECFHLAATRLGITSSRAALTERRALKKLIERARTEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVSKPFEDGVRGGQCHGFDRQISKLGSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFNDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDTESTNSRSINSVNSCKSKGVKVVPLEENCISEQTEGNATESLSVQEEEGGEQYLSFLKVLTEGNNWKRKCKVVERLRLLLRDDEEARIFMGANGFVEALFQFLQSAVREGNAMAQENGAMALFNLAVNNNRNKEVMISTGIISLLEEMISSSNLYGCSTALYLNLSCLEEAKHMIGTSQAVQFLIKMLQAKTEVQCKLDALHALYNISTVPSNISNLLSSGIIDGLQSLLVGQADCMLTEKCITVLVNLAVSHVGREEMILNPELISTLASILDTGEAIEQEQAVSCLLILCNRSEKCCEMVLQEGAIPALVSISVNGTSRGREKAQKLLMHFREQRQRDLSPAKTQQCSPEVGDLCMPPQETKPLCKSISRRRVGKALSFLWKSKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02032 766 SUPERFAMILY ARM repeat 431 708 IPR016024 -
Car05g02032 766 SUPERFAMILY RING/U-box 277 355 - -
Car05g02032 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Car05g02032 766 Gene3D - 429 707 IPR011989 -
Car05g02032 766 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Car05g02032 766 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Car05g02032 766 MobiDBLite consensus disorder prediction 223 244 - -
Car05g02032 766 CDD RING-Ubox_PUB 284 326 IPR045210 -
Car05g02032 766 PANTHER U BOX DOMAIN-CONTAINING 2 749 - -
Car05g02032 766 SMART arm_5 502 540 IPR000225 GO:0005515
Car05g02032 766 SMART arm_5 541 582 IPR000225 GO:0005515
Car05g02032 766 SMART arm_5 456 500 IPR000225 GO:0005515
Car05g02032 766 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Car05g02032 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 749 - -
Car05g02032 766 MobiDBLite consensus disorder prediction 225 239 - -
Car05g02032 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02032 Car-Chr5 65584002 65589373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02032 2 765 U-box Gene Family AT1G24330 65.469 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02032 - - gmx:100804344 1272.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02032 05 65584002 65589373 Car06g01113 06 10812427 10817977 PCT