Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02024 ATGGTGAAGTACTCCAGAGAACCCGATAATCCCACCAAATCCTGCAAAGCCAGAGGTGCTGACCTTAGGGTGCATTTCAAGAACACTAGGGAAACAGCGTTTGCCATCAGGAAGTTGCCATTGACAAAAGCTAAAAGATATTTGGAAGATGTTTTGGCCCACAAACAGGCCATTCCTTTCAGACGCTTTTGTCGTGGTGTTGGAAGGACTGCCCAAGCTAAGAACAGACATTCTAATGGGCAAGGACGCTGGCCTATCAAGTCAGCTAAATTCATTCTTGATTGTAATGCTGAAGTGAAAGGTTTGGATGTCGATGCTCTATACGTATCTCATGTCCAGGTCAACCAAGCTCAAAAGCAAAGACGTCGTACATACCGTGCTCACGGAAGAATCAATCCCTACATGTCATCTCCATGCCACATTGAACTGATTTTATCTGAGAAGGAAGAAGCTGTCCAGAAAGAGCCCGAGTCCCAGTTGGCAACTAGCAACAAGAAGAAGTCTCAAGGTCTTTGA 516 0.4535 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLTKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPIKSAKFILDCNAEVKGLDVDALYVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEPESQLATSNKKKSQGL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02024 171 PANTHER 60S RIBOSOMAL PROTEIN L17 1 165 IPR005721 GO:0003735|GO:0006412|GO:0015934
Car05g02024 171 Gene3D Ribosomal protein L22/L17 1 170 IPR036394 GO:0003735|GO:0005840|GO:0006412
Car05g02024 171 MobiDBLite consensus disorder prediction 150 171 - -
Car05g02024 171 MobiDBLite consensus disorder prediction 156 171 - -
Car05g02024 171 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 148 IPR005721 GO:0003735|GO:0006412|GO:0015934
Car05g02024 171 ProSitePatterns Ribosomal protein L22 signature. 121 145 IPR018260 GO:0003735|GO:0005840|GO:0006412
Car05g02024 171 CDD Ribosomal_L22 15 145 IPR001063 GO:0003735|GO:0005840|GO:0006412
Car05g02024 171 Pfam Ribosomal protein L22p/L17e 17 146 IPR001063 GO:0003735|GO:0005840|GO:0006412
Car05g02024 171 SUPERFAMILY Ribosomal protein L22 1 148 IPR036394 GO:0003735|GO:0005840|GO:0006412
Car05g02024 171 PANTHER 60S RIBOSOMAL PROTEIN L17-1 ISOFORM X1 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02024 Car-Chr5 65527870 65532481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02024 1 166 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 84.302 5.14e-108 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02024 K02880 - jre:108982519 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02024 05 65527870 65532481 Car06g01104 06 10726395 10730027 PCT