Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02008 ATGGAGTGGAATGCGAAATCTCCCGGGCAATGGGACTGGGAACACTTATTCTTCTTGAATTCAAAAGCAACAGAAAATCCCAGGTTACAATCAACTGATTGGAGCGCGGAGGCAGATCGAGAAATCAATGCTGGTGTTTTGTTTCCGTCGGGTGGTAGTGGTTATTCTCTGCACGCTTCATCCTCGAGAAGCTCAAAGTCTGCTTCCAATAATTCATCATCAAATGGAGACAGCAACAGCAAAACATCGATGCTAACTCAGGAAGGTTCTCAAGATGATTCAACTGGTAAGAAAGAATTGTCGAAAGGAGAGCCGATCGAAACTTCTCCAGCAGCAGAGCCCTCTGCTGTTGTCTCTGGTGACACATTGCTCACATTAAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTTCTGCCGGAAGTCATTCCAAGAAATCTGATTTCTCTGCAGTTGATCTTTCGTCTGCAAAGAAAGGTAAATCGAGCAGTCGGAACTTGATACATCCAAGCTGCCAGGTGGAAGGTTGCGGTATTGACCTCTCTTCTGCTAAAGATTATCATCGAAAACATCGTGTTTGTGACACTCATTCCAAATCCCCCAAGGTGGTTATAGCTGGTTTGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTTCCATTCTTTATCAGAGTTTGATGAGAAAAAAAGAAGCTGCAGAAGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAATGCGATTGAATCCATCAGCTCTGTCTTCGTCGTCCTATGATGGGAGGCAAATTATGGGCCAATTTGCTTTTTCAAGGAATGCAACAAATTTAGCTTGGCAGGACATACACAGCAGCAAGTTCCCTCAAACAAAAGATTTTATTCTCAAAACTCCGAAATCTTTTAATAAGATTGTCACTATGCTTTCTGATGATTCCAGTGACCTTCTTGCTTCCAAAGGCATAGGAACCAAGGCTACTCTTCCAGGTATTGAAGACTCATCTAACTTGTCTGATCCAAATGCTACGCAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACAAATTCATGGGGCGCCGCATACCAAACCAAATCTCTCTCCCTAGAACACTCCAACCGAACGAGTTCCACTCCGTCCATAACACACGCAATTGCACCGCGGTTTCCATTTTCGTCATCGGAATATTGGCACACTGATCAACAACAGGCCAACTCCAGCACCTGCATCTCGTTCTCGGGTTATGACAGTAACAATCGCTTTCAAGACTTTGAGCATTTCAACACACCCTTTGATTCGGGTTTCCCTTGCAACCAGCTGGATTAA 1332 0.4452 MEWNAKSPGQWDWEHLFFLNSKATENPRLQSTDWSAEADREINAGVLFPSGGSGYSLHASSSRSSKSASNNSSSNGDSNSKTSMLTQEGSQDDSTGKKELSKGEPIETSPAAEPSAVVSGDTLLTLKLGKRFYFEDVSAGSHSKKSDFSAVDLSSAKKGKSSSRNLIHPSCQVEGCGIDLSSAKDYHRKHRVCDTHSKSPKVVIAGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQPEAMRLNPSALSSSSYDGRQIMGQFAFSRNATNLAWQDIHSSKFPQTKDFILKTPKSFNKIVTMLSDDSSDLLASKGIGTKATLPGIEDSSNLSDPNATQDVNRALSLLSTNSWGAAYQTKSLSLEHSNRTSSTPSITHAIAPRFPFSSSEYWHTDQQQANSSTCISFSGYDSNNRFQDFEHFNTPFDSGFPCNQLD 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02008 443 Gene3D - 167 232 IPR036893 GO:0003677|GO:0005634
Car05g02008 443 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Car05g02008 443 MobiDBLite consensus disorder prediction 55 91 - -
Car05g02008 443 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 442 IPR044817 GO:0003677
Car05g02008 443 Pfam SBP domain 171 244 IPR004333 GO:0003677
Car05g02008 443 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 21 442 - -
Car05g02008 443 MobiDBLite consensus disorder prediction 232 260 - -
Car05g02008 443 MobiDBLite consensus disorder prediction 55 115 - -
Car05g02008 443 SUPERFAMILY SBT domain 169 250 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02008 Car-Chr5 65390078 65393099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02008 1 421 SBP-box Gene Family AT5G43270 37.838 4.18e-62 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car05g02008 SBP 5.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02008 - - gmx:100781289 568.926