Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02006 ATGAGTTTGCTCCATGTAATTGGATTTGGTCTTAAGGTGGGGCATCTACTTTTAGTGCTATGTTGCTGGATTATATCTGTCATTTACATCAACTGGTTCAATAGCATGGACACCACCAAGATGGGTTTTTTAGGAGATGGTGGAAAGATGTGGCTCAAATGGTGGGAAAAGATCTTGTGCAGCACATGTAAAATCCATCAGCACTACTATCACTGTATTGGGTCTAAGAAAGTTAGGGGAACTTTGTGGAGGAAATTATTGCTGACATGGGTTTTGGGTTGGTGCATAGTATCTTTGTGGATCTTCTGTTGTATGAGCTTACAAGCTACTGAGAAGAGGAAAGAGACTTTGGCTAGTATGTGTGATGAAAGAGCTAGAATGTTACAGGACCAGTTTAATGTTAGTATGAATCATATTCAAGCTATGTCTATCTTGATCTCAACTTTTCATCATGCTAAGAACCCCTCTGCCATTGATCAGAGAACATTTGCAAAGTATACAGAAAGAACAGCTTTTGAGAGGCCACTTACAAGTGGTGTTGCATATGCTGTAAGGGCGCTTCATTCTGAAAGGGAACAATTTGAGAAGCAACAAGGGTGGACAATTAAGAGAATGGATACTTTGGAGCAGAATCCGGTTCACGAAGACGACTATGTACCTGATGCATTGGAACCATCACCTATCCATGAGGAATATGCTCCTGTCATCTTTGCACAGGATACAATTTCACATGTTATATCTATTGATGTTCTTTCTGGAAAGGAAGACCGTGAAAATGTGTTGCGTGCAAGAGAATCTGGTAAAGGAGTTTTAACTGCCCCTTTCAGGCTGTTGAAGACAAACCGTTTAGGGGTTATCCTCACATTTGCTGTCTACAAGACAGATCTTCCATCAAATGCTACCCCAAATGAAAGGATTGAAGCTACTGATGGGTATCTTGGTGGGGTGTTTGAAATAGAGTCATTAGTGGAGAAATTGCTTCAGCAGCTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGACACAACTAATCATACCCACCCAATTCCCATGTATGGTTCAAATGAATCTGGTGATGTGTTCTATCATGTCAGCCATCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCACCATGGCCATGGTTGGCGATAACTACATCAATTGGCATCCTTATTATTGCACTCCTTGTTGGACATATATTTCATGCAACTGTAAATCGAATTGCCAAAGTAGAGGAGGATTGTCGCAAGATGACGGAGCTTAAAAAACTAGCTGAGGAAGCTGATGTTGCTAAATCCCAGTTCCTTGCTACTGTTTCGCACGAGATCAGAACTCCAATGAATGGTGTTTTAGGGATGATGAATATGCTCATGGACACTGATCTAGATGTAACCCAACAGGAATATGTCAGAACTGCACAAGGCAGTGGAAAAGCTCTGGTGTCAATTATAAATGAAGTTTTGGACCAGGCAAAAATTAAATCTGGTAAGTTAAAGCTCGAGGCTGTGCTGTTCGATATACGTGCAATTATGGATGATGTATTGTCACTTTTTTCTGAGAAATCTCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTTTCGGATCAGGTCCCTGAACAACTTATAGGCGACCCAGGACGGTTTCGACAAATAATTACAAATCTCATGGGTAACTCAATTAAGTTCACAGACAAAGGACACATCTTTGTAACTATCCATCTTGTTGAGGAGGTTTTTCATTCAATAGAAGTCGAGAGAGAATCCACTTCAAAAGATATAGAAGGTACATTAAGTGGTTTACCAGTTGCTGATGGTCGCCGCAGCTGGGAAGGATTCCGAGCTTTCAGTAACGAGGGACTTCTCGGCTCTTTCTCATCCTCCTCCAATGATCTCGTCAATTTGATTGTATCGGTCGAAGATACAGGCGAAGGTATTCCTCTAGAGGCTCAGTCGATGATATTCATTCCATTCATGCAGGTAGGCTCATCTATGTCGAAAAAACACGGTGGAACTGGAATTGGTCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGAGAAATTGGATTTGTCAGTGAACCGAAGATCGGAAGCACTTTCACATTTACAGCTATGTTCACCAATGCATGTCCTCATTCAAATGAGTTTAAAACTCAGCAAATCAACAACCAACCTCACCCTGCATTTTCAGATTTTCATGGAATGGCTGCACTAGTTATCGACCCGCGGGCCGTTCGAGCTGAAGTGTCGAGGTATCACATCCAACGGCTTGGCATTCGTGTTGAAATAGTTTCGGATTTGAAGCGAGGTTTGTCCTTCATATCCAATAAGAATGTAGTTATCAATATGATCCTTATTGAACAAGAGGTTTGGGAAAAAGACTCAAGCATTTCATCAAACTTTGTGAATAACATTAGGAAAATTGAAGTTGATAATGTGGTTCCTCCAAAGCTATTCATTCTTGTTAATTCTAGTAGTTCTTTAAGATCAAGTTCTGTGACATCAAGTGTTCATAATCCAACCATCACGAAACCTTTGAGAGCAAGTATGCTAGCTGCTTCATTACAAAGAGCTATGGGTGTTGGGAACAAGGGAAATCCTCGAAACGGAGAACACCAGGGTTTGTCGCTCCACCATCTTCTTTCTGGGAGAAAGATTCTTATTGTTGATGACAATAGCGTGAACCGCACGGTAGCGGCTGGTGCTTTGAAAAAGTATGGAGCTGAAGTGGTTTGTGTAAGCAGTGGAAAAGATGCCATCTCTATGCTGAAGCAACCTCATCAGTTTGATGCTTGTTTCATGGATGTTCAAATGCCTGAAATGGATGGGTTTGAAGCTACAAGCCGAATTAGAGAGATTGAAAGGAGTGTGAACAATTCAAAGTTTCATCTACCAATTTTGGCTATGACCGCAGACGTGATCCAAGCTACACATGAAGAATGCTTAAAGCGTGGAATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAACTTTATAGAGAGGTTTCAAAGTTTTTCCAATCTTCTTGA 3066 0.4103 MSLLHVIGFGLKVGHLLLVLCCWIISVIYINWFNSMDTTKMGFLGDGGKMWLKWWEKILCSTCKIHQHYYHCIGSKKVRGTLWRKLLLTWVLGWCIVSLWIFCCMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFAKYTERTAFERPLTSGVAYAVRALHSEREQFEKQQGWTIKRMDTLEQNPVHEDDYVPDALEPSPIHEEYAPVIFAQDTISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPSNATPNERIEATDGYLGGVFEIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNESGDVFYHVSHLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILIIALLVGHIFHATVNRIAKVEEDCRKMTELKKLAEEADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKIKSGKLKLEAVLFDIRAIMDDVLSLFSEKSQGKGVELAVYVSDQVPEQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERESTSKDIEGTLSGLPVADGRRSWEGFRAFSNEGLLGSFSSSSNDLVNLIVSVEDTGEGIPLEAQSMIFIPFMQVGSSMSKKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTFTAMFTNACPHSNEFKTQQINNQPHPAFSDFHGMAALVIDPRAVRAEVSRYHIQRLGIRVEIVSDLKRGLSFISNKNVVINMILIEQEVWEKDSSISSNFVNNIRKIEVDNVVPPKLFILVNSSSSLRSSSVTSSVHNPTITKPLRASMLAASLQRAMGVGNKGNPRNGEHQGLSLHHLLSGRKILIVDDNSVNRTVAAGALKKYGAEVVCVSSGKDAISMLKQPHQFDACFMDVQMPEMDGFEATSRIREIERSVNNSKFHLPILAMTADVIQATHEECLKRGMDGYVSKPFEAEQLYREVSKFFQSS 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02006 1021 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 553 716 IPR003594 -
Car05g02006 1021 PRINTS Bacterial sensor protein C-terminal signature 644 658 IPR004358 GO:0016310|GO:0016772
Car05g02006 1021 PRINTS Bacterial sensor protein C-terminal signature 662 672 IPR004358 GO:0016310|GO:0016772
Car05g02006 1021 PRINTS Bacterial sensor protein C-terminal signature 679 697 IPR004358 GO:0016310|GO:0016772
Car05g02006 1021 PRINTS Bacterial sensor protein C-terminal signature 703 716 IPR004358 GO:0016310|GO:0016772
Car05g02006 1021 Gene3D - 880 1019 - -
Car05g02006 1021 CDD HATPase_EvgS-ArcB-TorS-like 558 715 - -
Car05g02006 1021 Coils Coil 418 438 - -
Car05g02006 1021 ProSiteProfiles Histidine kinase domain profile. 448 719 IPR005467 -
Car05g02006 1021 Pfam CHASE domain 157 353 IPR006189 -
Car05g02006 1021 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 495 714 IPR036890 -
Car05g02006 1021 SMART HisKA_10 441 506 IPR003661 GO:0000155|GO:0007165
Car05g02006 1021 SMART HKATPase_4 553 719 IPR003594 -
Car05g02006 1021 SUPERFAMILY CheY-like 742 871 IPR011006 -
Car05g02006 1021 SMART REC_2 895 1014 IPR001789 GO:0000160
Car05g02006 1021 Gene3D - 409 504 - -
Car05g02006 1021 Pfam His Kinase A (phospho-acceptor) domain 441 506 IPR003661 GO:0000155|GO:0007165
Car05g02006 1021 SMART CHASE_2 154 355 IPR006189 -
Car05g02006 1021 Gene3D - 505 720 IPR036890 -
Car05g02006 1021 Pfam Response regulator receiver domain 897 1013 IPR001789 GO:0000160
Car05g02006 1021 ProSiteProfiles Response regulatory domain profile. 747 870 IPR001789 GO:0000160
Car05g02006 1021 SUPERFAMILY CheY-like 893 1017 IPR011006 -
Car05g02006 1021 PANTHER TWO-COMPONENT HISTIDINE KINASE 54 1020 - -
Car05g02006 1021 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 430 507 IPR036097 GO:0000155|GO:0007165
Car05g02006 1021 ProSiteProfiles CHASE domain profile. 154 380 IPR006189 -
Car05g02006 1021 Gene3D CHASE domain 158 387 IPR042240 -
Car05g02006 1021 CDD HisKA 441 502 IPR003661 GO:0000155|GO:0007165
Car05g02006 1021 CDD REC_hyHK_CKI1_RcsC-like 897 1014 - -
Car05g02006 1021 PANTHER HISTIDINE KINASE 3 54 1020 - -
Car05g02006 1021 CDD PRTases_typeI 858 924 IPR000836 -
Car05g02006 1021 Gene3D - 105 157 - -
Car05g02006 1021 ProSiteProfiles Response regulatory domain profile. 896 1018 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02006 Car-Chr5 65346271 65352296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02006 1 1020 Miscellaneous Gene Families AT1G27320 66.603 0.0 1374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car05g02006 CHASE 6e-35 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02006 K14489 - gmx:100801546 1649.03