Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02003 ATGGCAGGTTTTCAATACAATATCAATGATCTGTTTCAAGAAGCTAAGAGAAGATGGCTAAAGCCGATAGAAGTGCTTTACATTTTGCAGAATCAACATAATACGTGCGAGTTCACAAACGTGCCCCCTCACCAGCCAAGTGGTGGATCTGTGTATCTTTTTAATAAAAGAGTCATGCGTTTCTTCCGAAAAGATGGTCATAATTGGCGCAAGAAAAAAGACGGAAGAACTGTATCAGAAGCGCATGAACGGCTTAAGGTTGGAAATTTTGAAGCCCTAAACTGTTACTATGCACACGGAGAGGAGAACCGTAGTTTCCAGAGGCGGAGTTATTGGATGTTGAACCCGGAATATGAGCATATTGTTCTCGTGCATTACAGAGAAACAAATGAGGGGACATCCAATTCTGGACCTGTCACACAATTGTCACCGTTTAGTCAGAGTCATAACTCGCATACTACTCAAAACCCTGAGACAACATCCATAGTTGATTATTCATGTGAACCTAGTCAAAATTTCTCCAGTTCTGGGTCTTTAGAAGTTACCTCTGATATAGTCGTCATGAACAATGGAATGGATCACTTGGAGAAAACAGATGCACAAGCTTTGCAGCAATTGGAGGAACAATTAAGTTTGAATGAGGACGGCTTCAAAGAAGTTTCTCCCTTTTATAGCGAGCATGAATTTTTTGGTGCATTCTCTGGACCTGACGATCATAAACAACCATATGATGGGTATAATGGAACAAAAGATGGCAGTAGTAATCATTATCATGAATTACTTTACTATGATTTCCCCGGTGGGCATGAAAAAACCTTATCTTGGACAGAGATGCTGCAATCACGCAAGTCCTCATCTGCGATCAAGTTACCAGAACAACATGCACACGAGGCATTTGACAATGAAAAGTCACTATCTTCTTCAGGAAGAGAAATGATTGCCAACAGGGAAATCAATTACCGGCTAAACCCCAACACCAACAGCAATAATGCTGAGAACTCTGTCTTCTCATTTCCTCAAGACGTTGGAGTCAAATTTTCTTCACATTCATCCGTAGAAACTCAAGATACTAATTCTGGCTGCTATGAAACATTGTTTGCACAAAGCCAAATTCAAGAACCTCTGGATGCATATTCAAGCTTGACTGTTGGACAGAAACATAAATTTACAATTAAGGCTGTCTCCCCAGAATATTGTTATGCCACTGAGGCAACAAAGGTGATCATTATTGGATCTTTTCTCTGCCTTCCCTCGGATTCTACCTGGGCTTGTATGTTTGGTGATGCTCCATCCCATCTTCTTGGGAAGGTTGCTCTGTGCATTTCTTCAGGAAATAAGGAACCATGCAGTGAAGTCACAGAGTTTGAGTTTCGTAATAAGACCAATAGTTGCACTTGCTGTAATACTTTGGAAACAGAAGCTGCCAGAAGTCCAGAAGAGCTGTTATTACTAGTTCGATTTGCAGAAGTGCTCATTTCTGCTTCATCAATAAAGGACAACCGCACAGAATCTGGAAGTCACCTTCCAACAGAACAGAAAGAAGATGATGATTCATGGAGCCATATTATAGACTCTCTCCTAGTTGGCAACAGAACTTCATCTGGTACTATTGATTGGCTTCTTCAAGAGCTGCTGAAGGATAAGCTGCAACACTGGCTTTCTTGCAAATCCAATGAAAAAGATGAAGGGGCAGGTTGTTCTTTGTCCCAGAAAGAGCAAGGGGTTATACACATGGCTTCTGGATTGGGTTTCGAGTGGGCCTTGAACCCCATTCTCAGTTGTGGTGTGAATGTTAATTTCCGTGATATCAATGGATTGACTGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCTTCACTTATAGCTGCCGGTGCATCTGCTGGAGCAGTGACAGATCCAAACTCACAAGATCCGAATGGTAAAACTGCTGCATCTATTGCGGCCAGCAATAGCTACAAGGGACTGGCAGGTTATCTTGCGGAGGTAGATCTAACAAGTCATCTGTCATCCCTCACATTGGAAAAGTGTGAAGCTTATCAAGATTCTTGCGAGCTTGAAGCTGAGCTAACTGTCAACAGTGTGTCTAAGAAAAATCTTGAAGCCAGTGACGATGAGGCTTCACTAAAAAATACCTTGGGTGCTGTCAGAAATGCAGCTCAGGCAGCTGCACGGATACAAGCCGCTTTTCGTGCACATTCTTTCAGAAAACGGAAAGAGAGAGAAGCTGCCACCAACACTTATCTAAATGGACATGTCTTTGGTGTAGGTAGCATTGCTGGCAATGTTAGGAGCTCACGTTACAATTCAGCCGCCTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGAGTTCTTAGCTCTGCGCCAAAAAGTTGTAAAGATACAGGCTCATGTGAGGGGTTACCAGGCCCGGAGGCAATACAAGCTAATGATATGGGCAGTTGGAATCTTGGACAAAGTTGTGCTAAGATGGCGGAGAAAAGGAGTTGGTTTGCGAAGTTCTCCACATAAAACAAAGACAAATGAGGAAAGTGATGATGAGGATTTTCTCAAGGCGTACAGGCAAGAAAAAGTACATGCAACAATTGAAAAAGCTTTGGCGCGGGTGCTTTCCATGGCCCATTCTGCGGGTGCTCGTCGGCAATATAATCGCCTGCTTGAGATATATCGTCAAACCAAGGCTGAACTTGGCAGCAGGAGTGATGATACACTGTTATCAACTACAGTAGAGGAGGCTTGGTATATTGAAGATGATACTTTAAATGCTTGGTATATTGAAGATGATAATTTAAATCAATATCCTTGGGAAACCCTCTAG 2838 0.4249 MAGFQYNINDLFQEAKRRWLKPIEVLYILQNQHNTCEFTNVPPHQPSGGSVYLFNKRVMRFFRKDGHNWRKKKDGRTVSEAHERLKVGNFEALNCYYAHGEENRSFQRRSYWMLNPEYEHIVLVHYRETNEGTSNSGPVTQLSPFSQSHNSHTTQNPETTSIVDYSCEPSQNFSSSGSLEVTSDIVVMNNGMDHLEKTDAQALQQLEEQLSLNEDGFKEVSPFYSEHEFFGAFSGPDDHKQPYDGYNGTKDGSSNHYHELLYYDFPGGHEKTLSWTEMLQSRKSSSAIKLPEQHAHEAFDNEKSLSSSGREMIANREINYRLNPNTNSNNAENSVFSFPQDVGVKFSSHSSVETQDTNSGCYETLFAQSQIQEPLDAYSSLTVGQKHKFTIKAVSPEYCYATEATKVIIIGSFLCLPSDSTWACMFGDAPSHLLGKVALCISSGNKEPCSEVTEFEFRNKTNSCTCCNTLETEAARSPEELLLLVRFAEVLISASSIKDNRTESGSHLPTEQKEDDDSWSHIIDSLLVGNRTSSGTIDWLLQELLKDKLQHWLSCKSNEKDEGAGCSLSQKEQGVIHMASGLGFEWALNPILSCGVNVNFRDINGLTALHWAARFGREKMVASLIAAGASAGAVTDPNSQDPNGKTAASIAASNSYKGLAGYLAEVDLTSHLSSLTLEKCEAYQDSCELEAELTVNSVSKKNLEASDDEASLKNTLGAVRNAAQAAARIQAAFRAHSFRKRKEREAATNTYLNGHVFGVGSIAGNVRSSRYNSAALSIQKKYRGWKGRKEFLALRQKVVKIQAHVRGYQARRQYKLMIWAVGILDKVVLRWRRKGVGLRSSPHKTKTNEESDDEDFLKAYRQEKVHATIEKALARVLSMAHSAGARRQYNRLLEIYRQTKAELGSRSDDTLLSTTVEEAWYIEDDTLNAWYIEDDNLNQYPWETL 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02003 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 722 822 IPR027417 -
Car05g02003 945 SMART iq_5 770 792 IPR000048 GO:0005515
Car05g02003 945 SMART iq_5 721 743 IPR000048 GO:0005515
Car05g02003 945 SMART iq_5 793 815 IPR000048 GO:0005515
Car05g02003 945 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Car05g02003 945 ProSiteProfiles IQ motif profile. 771 800 IPR000048 GO:0005515
Car05g02003 945 ProSiteProfiles IQ motif profile. 722 750 IPR000048 GO:0005515
Car05g02003 945 PANTHER CALMODULIN-BINDING PROTEIN 3 930 - -
Car05g02003 945 Gene3D - 530 669 IPR036770 -
Car05g02003 945 Pfam CG-1 domain 14 128 IPR005559 GO:0003677
Car05g02003 945 SMART CG_1_2 11 130 IPR005559 GO:0003677
Car05g02003 945 SMART ANK_2a 643 672 IPR002110 GO:0005515
Car05g02003 945 SMART ANK_2a 604 633 IPR002110 GO:0005515
Car05g02003 945 Pfam IQ calmodulin-binding motif 773 791 IPR000048 GO:0005515
Car05g02003 945 Pfam IQ calmodulin-binding motif 796 815 IPR000048 GO:0005515
Car05g02003 945 Pfam Ankyrin repeats (3 copies) 577 665 IPR002110 GO:0005515
Car05g02003 945 SUPERFAMILY E set domains 390 458 IPR014756 -
Car05g02003 945 ProSiteProfiles Ankyrin repeat region circular profile. 604 630 - -
Car05g02003 945 ProSiteProfiles IQ motif profile. 794 818 IPR000048 GO:0005515
Car05g02003 945 ProSiteProfiles CG-1 DNA-binding domain profile. 8 135 IPR005559 GO:0003677
Car05g02003 945 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 3 930 - -
Car05g02003 945 MobiDBLite consensus disorder prediction 132 167 - -
Car05g02003 945 SUPERFAMILY Ankyrin repeat 574 666 IPR036770 -
Car05g02003 945 Gene3D - 768 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02003 Car-Chr5 65331083 65339491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02003 4 904 CAMTA Transcription Factor Family AT1G67310 48.069 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Car05g02003 CG-1 7.7e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02003 K21596 - gmx:100791430 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02003 05 65331083 65339491 Car06g01088 06 10530183 10538227 PCT