Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01990 ATGCAAATTCATTATCAAGTTTCCAATCCAAATTATCCTTCAAAATATCCCAAGTTGAAACGTTTCTCGTCGTTTCACTCGCTCTCCTTTTTCCAGAACCACCGTTGCAGGCGAGAAGAACATAAAAACCTATTGGTTATGGTTTCAATCCCCAAATTTCGTAGAATTTTCTCCACGATAGAAGCCATAAAACGAGAAACATATAGTGCATGCATAAATTCTCATTATGGGGGTTGTAGCAAGACTTTGGATGAAAATCCAAACTTGGCACCAAATGAGAAGCTATGTAGGGTAGGGCTTTTCTGGGATTTGGATAATAAACCACCGAATTCCATGCCACCTTATGAAGTTGTCAATAAGCTGAGAATAGCTGCAGCTTCGTTTGGGGTTGTTCGCCATATGGTGGATTATGCCAATAGCCACACCTTTAGCAATGTCCCCAAAGTTGTTCGTGAGAGGAGGAAAGAGCGGCAACTGTTGTTCCGTTTGGAGAATAAGGGTGTCATTAAACCTAATGAGCCTTATCTTTGTCGCGTTTGTGGGAGAAAAGTTTACACGAATAAAAAGCTCGTTAATCATTTCAAGCAACTGCATAAGCGTGAGCACTTCAAAAGGATGAACCGGATCGAGTCATCTAGAGGGAGTAGGAAGGTGAAATTGGTGGGGAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTGTTTTGACTCCTAAAGTTAGGTATGGTTTAGCTGATGAGCTGAAAAGGGCAGGGGTTTGGGTTCAAACTGTCTTGGATAGGCCACAAGCTGCGGATATTGCGCTGCAAAATCATATGGTGGATATGATGGATCATAGGAGGATTGAGGATGCTAGTAGTGATGGAGTGTTGAAAAGGACTGCCGATACTTCTTTTTCTTGGGAGGAAATTTTGATGGGGAAGGCTAAGAAGGAGGCTGTAACAGTTGTGGAAAACTGGAAAGATCGTGATATATTGAAAAGGTTGGAGTGGACATACAACCCAGACGTGGATAAAAAGAAAGTCAACTTGGATGATATAGTTACTGAAACATCTGAAGATGATGATATCAAAGATATTTGTGGTGATATTGATGATGATTACAAGGATGACAGAGGTTCTTGGTGGGAGTTAGACCCCAATGATGATGATGTTGCAAATAGATGA 1176 0.4099 MQIHYQVSNPNYPSKYPKLKRFSSFHSLSFFQNHRCRREEHKNLLVMVSIPKFRRIFSTIEAIKRETYSACINSHYGGCSKTLDENPNLAPNEKLCRVGLFWDLDNKPPNSMPPYEVVNKLRIAAASFGVVRHMVDYANSHTFSNVPKVVRERRKERQLLFRLENKGVIKPNEPYLCRVCGRKVYTNKKLVNHFKQLHKREHFKRMNRIESSRGSRKVKLVGKYSMKMEKYKKAASAVLTPKVRYGLADELKRAGVWVQTVLDRPQAADIALQNHMVDMMDHRRIEDASSDGVLKRTADTSFSWEEILMGKAKKEAVTVVENWKDRDILKRLEWTYNPDVDKKKVNLDDIVTETSEDDDIKDICGDIDDDYKDDRGSWWELDPNDDDVANR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01990 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 203 IPR013087 -
Car05g01990 391 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 290 388 - -
Car05g01990 391 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 78 286 - -
Car05g01990 391 ProSitePatterns Zinc finger C2H2 type domain signature. 177 198 IPR013087 -
Car05g01990 391 PANTHER - 290 388 - -
Car05g01990 391 PANTHER - 78 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01990 Car-Chr5 65231527 65233854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01990 59 391 C2H2 Transcription Factor Family AT4G12240 47.091 3.62e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car05g01990 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01990 - - lja:Lj3g3v3326020.1 488.419