Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01979 ATGACTCACTCAAAATCAAAACCCAAAAAAACCCTAGTTtctctctctagactctttctttctttctctctcATCCTACACACCGCCATTGCCGACGATGGCGTCTTCATGTCGAAGCTATCAAAATCCCTTAACCCAACTCCTTCAGGGTGGTCGTCGAGCACCTTCTGCAACTGGACCGGTGTCAAATGTGACGACTCAAACCGCGTCACATCGATCAACTTAGCTTCCAAGTCACTCAGTGGAACACTACCTTCCGATCTAAACTCGCTCTCTCAACTCACTTCCCTTTCTCTACAATCCAACTCGCTCTCCGGCGCGTTACCTTCACTCGCTGATCTCTCCATGCTTGTAACGGTTTTCCTCGGAAGCAATAACTTCACTTCGATAACCGATGGTTGCTTTAACGGACTCACGAGTCTCCAGAAACTCTCCATTTCCCAAAATATCAACCTCGCACCGTGGACGATTCCAACTGAGTTGAATCAGTCTTCGAACATTGTTGAACTCGACCTCGGTGAAACGAACCTCGTTGGTTCCTTGCCGGATATATTCGTTCCCTTGGTTAGTTTGCAGGATCTTCGTCTTTCTTATAATAACCTCACCGGAGATTTACCTAACTCGTTTTCCGGATCCGGGATTCAGAATTTGTGGCTCAACAATCAGCATGATGGGTTTGGTTTTACTGGTTCAATCGACGTGCTTTCTTCGATGACTCACTTGACTCAAGTGTGGTTTCAGAAGAACAAGTTCACCGGTCCAATTCCTGATTTGTCAAATTGTACTAATTTGTATGATCTTCAGCTTCGTGATAATCAATTAACTGGTGTTGTTTCACCTTCTTTGATGAGTTTATCTAGTTTGCAGAATGTTTCGTTGGATAACAATAAGTTGCAGGGTCCTTTTCCTTCTTTTGGGAAAGGTGTAAAGGTTACTCTTGATGATGGGATCAATAGCTTTTGTAGAAATACGCCTGGACCTTGTGATCCTAAGGTTACTACTTTGCTTGATATTGCTGCTGATTTTGGGTATCCGATTCAGTTGGCTAGTTCTTGGAAAGGGAATGATCCTTGTCAAGATTGGAGCTTCGTTGTTTGTTCAGGAGGGAAGATTATTACAGTTAATTTAGCTAAGCAGAATTTGACTGGAACTATTTCACCTGCATTTGGGAATTTAACTGATTTGAGGAATTTGTATCTAGGTGGTAATAATTTGTCGGGTTCTATACCGGGGAGTTTGACTGGTTTGGCACAACTTGAGGTTTTTGATGTGTCTAACAATAATCTATCCGGAGAGGTTCCTAAGTTCTCAGATAAAGTTAAGTTCAATTCTGCCGGTAATGTTTTGCTTGGGCCTTCTGGAGGTGGTGGAGGAAGTGGAACTACTCCACCAAAGGATTCTGGTGGTGCGCCGAGTGGAAGTCCTTCAGGAAAGGCAAGTGAATCTTCACTTTCGGCTGCTTGGATTGCAGGTATAGCTGTTATTGCTGTGTTTTTTGTTGCAGTGGTGTTGTTTGTGTTTTGTAAATGTTATGCTAAGAATAGGCGGCATGGGAAATTCGGAAGGGTTAATAATCCCGAAAATGGAAAAGTTGATGTTAAAATTGATGCTATGAGTGTTTCCAATTCTAATGGATATGCTGGAGTTGCGAGCGAGTTACAGAGTCAGGGAAGTGAGCGAAGTGACATTCAGGTTTTTGAGGGTGGAAATGTTACTATTTCAATCCAAGTTCTTAGGCAAGTAACCAATAATTTCAGTGAAGATAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTATAAAGGGGAATTGCATGATGGAACTAAGATTGCTGTGAAGAGGATGGAATCTGTTGCAGTGGGAACTAAGGGATTGAATGAGTTCCAAGCAGAGATTGCAGTTCTAACTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATACTGCATAAATGGAAATGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGAACATTGACACAACATCTGTTTGATTGGGGTGAAAATGGATGTGCTCCTTTGACTTGGAAACAAAGGGTAGCAATAGCTTTGGATGTAGCGCGGGGAGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCTAACATACTATTGGGTGATGACATGAGAGCAAAGGTTGCCGATTTCGGGTTGGTTAAAAATGCTCCGGATGGGAAATATTCGGTTGAGACAAGGTTGGCTGGAACATTTGGATATTTAGCACCTGAATATGCAGCCACTGGAAGAGTGACGACCAAAGTAGATGTTTACGCGTTCGGAGTAGTTCTGATGGAACTGATTACTGGTAGAAGGGCCTTGGATGATACTATGCCCGACGAAAGATCTCATTTGGTTTCGTGGTTCCGTAGGGTACTAGTCAACAAGGAGAACATCCCTAAGGCAATTGATCAAACACTCAACCCCGACGAGGAAACCATGGAGAGCATATATAAAATTGCTGAGCTGGCCGGCCATTGCACTGCTCGTGAACCATACCAGAGGCCAGATATGGGACATGCAGTGAATGTCCTGGTTCCTCTGGTGGAGCAATGGAAACCTACCAACCATGAAGAAGAAGAAGGTTATGGTATTGACCTTCACATGAGCCTTCCTCAAGCTCTACAAAGATGGCAAGCCAATGAAGGCACTTCAACAATGTTTAATGACATGTCTTTCTCACAAACCCAATCAAGCATTCCTGCAAAACCTTCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTAA 2802 0.4272 MTHSKSKPKKTLVSLSRLFLSFSLILHTAIADDGVFMSKLSKSLNPTPSGWSSSTFCNWTGVKCDDSNRVTSINLASKSLSGTLPSDLNSLSQLTSLSLQSNSLSGALPSLADLSMLVTVFLGSNNFTSITDGCFNGLTSLQKLSISQNINLAPWTIPTELNQSSNIVELDLGETNLVGSLPDIFVPLVSLQDLRLSYNNLTGDLPNSFSGSGIQNLWLNNQHDGFGFTGSIDVLSSMTHLTQVWFQKNKFTGPIPDLSNCTNLYDLQLRDNQLTGVVSPSLMSLSSLQNVSLDNNKLQGPFPSFGKGVKVTLDDGINSFCRNTPGPCDPKVTTLLDIAADFGYPIQLASSWKGNDPCQDWSFVVCSGGKIITVNLAKQNLTGTISPAFGNLTDLRNLYLGGNNLSGSIPGSLTGLAQLEVFDVSNNNLSGEVPKFSDKVKFNSAGNVLLGPSGGGGGSGTTPPKDSGGAPSGSPSGKASESSLSAAWIAGIAVIAVFFVAVVLFVFCKCYAKNRRHGKFGRVNNPENGKVDVKIDAMSVSNSNGYAGVASELQSQGSERSDIQVFEGGNVTISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTKGLNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWGENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTMPDERSHLVSWFRRVLVNKENIPKAIDQTLNPDEETMESIYKIAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTNHEEEEGYGIDLHMSLPQALQRWQANEGTSTMFNDMSFSQTQSSIPAKPSGFADSFDSMDCR 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01979 933 SMART LRR_typ_2 114 137 IPR003591 -
Car05g01979 933 SMART LRR_typ_2 91 113 IPR003591 -
Car05g01979 933 SMART LRR_typ_2 392 415 IPR003591 -
Car05g01979 933 SMART LRR_typ_2 188 211 IPR003591 -
Car05g01979 933 SMART LRR_typ_2 416 438 IPR003591 -
Car05g01979 933 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 21 933 - -
Car05g01979 933 Pfam Leucine rich repeat 374 429 IPR001611 GO:0005515
Car05g01979 933 Gene3D Phosphorylase Kinase; domain 1 546 662 - -
Car05g01979 933 SMART serkin_6 585 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01979 933 Pfam Leucine rich repeat N-terminal domain 39 65 IPR013210 -
Car05g01979 933 Pfam Leucine rich repeat N-terminal domain 333 367 IPR013210 -
Car05g01979 933 Gene3D Transferase(Phosphotransferase) domain 1 663 884 - -
Car05g01979 933 Coils Coil 932 933 - -
Car05g01979 933 Pfam Protein tyrosine and serine/threonine kinase 588 859 IPR001245 GO:0004672|GO:0006468
Car05g01979 933 ProSitePatterns Protein kinases ATP-binding region signature. 591 613 IPR017441 GO:0005524
Car05g01979 933 Gene3D Ribonuclease Inhibitor 35 328 IPR032675 -
Car05g01979 933 ProSiteProfiles Protein kinase domain profile. 585 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01979 933 Gene3D Ribonuclease Inhibitor 330 452 IPR032675 -
Car05g01979 933 SUPERFAMILY Protein kinase-like (PK-like) 562 861 IPR011009 -
Car05g01979 933 MobiDBLite consensus disorder prediction 452 477 - -
Car05g01979 933 MobiDBLite consensus disorder prediction 911 933 - -
Car05g01979 933 PANTHER OSJNBA0070M12.3 PROTEIN 21 933 - -
Car05g01979 933 CDD STKc_IRAK 591 864 - -
Car05g01979 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Car05g01979 933 SUPERFAMILY L domain-like 37 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01979 Car-Chr5 65144392 65148783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01979 70 882 Receptor kinase-like Gene Family AT1G55610 30.877 2.80e-97 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Car05g01979 PK_Tyr_Ser-Thr 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01979 - - gmx:100781851 1458.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01979 05 65144392 65148783 Car05g01979 05 65144392 65148783 ECH