Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01961 ATGGCTTTCTGTAATAAGATCGGAAATATCTTGAGGCAGGGTGCTGCCCAGAGCAGCCCAGCTCCTGTTTCGTCCATGCTTAACTACGTTCGCTTCATGTCTCAAAGCAAGCTTTTCATTGGAGGACTTTCATATGGAGTTGATGACCAGTCTCTTAGGGATGCATTTGCAAGTTTTGGAGAAGTGGTTGAGGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAATTTCTCCAGTGATGAACAAGCAACTTCAGCACTATCTGCTATGGATGGGCAGGATTTGAATGGGAGAAACATTCGTGTGTCCTATGCAAATGATAGACCTTCTGCTCctcgtggtggcggtggctatggtggtggctatggtgatggttttaactctcgcagtggtggtggtggtggcagcggtggctggtga 441 0.3583 MAFCNKIGNILRQGAAQSSPAPVSSMLNYVRFMSQSKLFIGGLSYGVDDQSLRDAFASFGEVVEARVITDRDTGRSRGFGFVNFSSDEQATSALSAMDGQDLNGRNIRVSYANDRPSAPRGGGGYGGGYGDGFNSRSGGGGGSGGW 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01961 146 MobiDBLite consensus disorder prediction 111 146 - -
Car05g01961 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Car05g01961 146 SMART rrm1_1 37 110 IPR000504 GO:0003723
Car05g01961 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Car05g01961 146 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 142 - -
Car05g01961 146 Gene3D - 26 146 IPR012677 -
Car05g01961 146 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 142 - -
Car05g01961 146 SUPERFAMILY RNA-binding domain, RBD 30 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01961 Car-Chr5 64882491 64884571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01961 36 124 Eukaryotic Initiation Factors Gene Family AT4G34110 40.449 2.46e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01961 - - gmx:100499841 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01961 05 64882491 64884571 Car05g01961 05 64882491 64884571 ECH