Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01947 ATGCGATCTTCATGGGCTGATTTGGCTGCAAATTCCGCGGCCGAAAATGCACCTACTGCTAACAATGCAAACAACACTCAAGCTCCTTCTCGACCTGTTTATGTTCCTCCTCATCTGAGGAACCGTGGACCTACACAatctgcacctgcacctgcttcagcatcatcatcAGACAAATTTTCTGCTCCTCCTCTTTCTGACAACGTTGGATCGCGTTGGGCACCGCCGCCTAGAAACGACTACCgtggtcgtgctgctggttttggtaacagaactggtggtggcggtggtggttgggatcgtcgtgAAGCCAATCCCTTTGCAGATCAGGATGATTCTGAAGAGCCTCTTACTCAACAGGAGCAGGAGAATACGGGGATAAACTTCGATGCTTATGAAGATATTCCAGTGGAGACTAGTGGTGGTAATGTTCCTCCTCCGGTGAATACTTTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAATATAAGGCGCTGCAAATATGTTAGGCCGACGCCTGTTCAGCGGCATGCGATACCAATATCTCTTGCAGGAAGGGATTTGATGGCTTGTGCGCAGACTGGTTCGGGGAAAACCGCAGCTTTCTGTTTTCCAATTATCAGTGGAATTATGACGGGTCAACCTGCGCAGAGGCCGCCTCGTGGGGTGCGAACCGTGTGCCCACTTGCTCTTGTTCTCTCACCAACTAGAGAGCTATCAATGCAGATACATGAAGAAGCTAAGAAGTTTGCATACCAGACAGGGGTTAGGGTGGTTGTTGCTTATGGCGGAGCTCCAATTAACCAGCAGCTACGAGAGCTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCAGGAAGACTAGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTAGGTATCTGGCCTTAGATGAGGCAGATAGGATGCTGGACATGGGTTTTGAACCCCAGATTAGGAAGATTGTAGAACAAATGGACATGCCCCCAGCAGGTGCCAGACAAACTATGCTGTTCAGTGCCACTTTTCCTAAAGAGATACAGAGACTAGCTTCTGATTTCCTTTCAAATTACATTTTTCTGGCTGTTGGAAGAGTTGGATCAAGTACTGATTTAATTGACCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAGAGAGCAAATGGTGTACAAGGAAAGCAAGCTTTAACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTGGAACACTGGTTGTGTCTTAATAATTTTCCAGCAACTACTATTCACGGTGACAGGACACAACAGGAAAGAGAATCGGCATTAAGGTCATTTAAAAGTGGCAACACTCCTATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTAGTTAACTTTGACCTTCCCAATGATATTGATGATTATGTACACCGAATTGGAAGAACGGGGAGAGCAGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGAAAATAATTCATCCCTAGCTAGGTCTCTACAAGATTTGATGCAAGAGGCAAATCAAGAGGTACCTGCTTGGCTCTCGCGGTTTGCTGCACGATCTTCCTTTGGTGGAGGGAAGAACCGTCGATCTGGAGGAGGACGATTTGGTGGCCGAGACTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGTTCTGATTACCATGGTGCGGGGAATAGCAGTGGCGGATATGGGGCTTCTGGTGGATACGGCGGAGGATATGGGGGTGGATATGGTGGAAATACCGCTGGTCCTGGGGTGACCAGTGCATGGGACTGA 1854 0.4466 MRSSWADLAANSAAENAPTANNANNTQAPSRPVYVPPHLRNRGPTQSAPAPASASSSDKFSAPPLSDNVGSRWAPPPRNDYRGRAAGFGNRTGGGGGGWDRREANPFADQDDSEEPLTQQEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVRPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEAKKFAYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRTQQERESALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNSSLARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSSGGYGASGGYGGGYGGGYGGNTAGPGVTSAWD 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01947 617 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 376 543 IPR001650 -
Car05g01947 617 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 365 IPR014001 -
Car05g01947 617 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Car05g01947 617 MobiDBLite consensus disorder prediction 548 567 - -
Car05g01947 617 Gene3D - 368 547 IPR027417 -
Car05g01947 617 SMART ultradead3 168 380 IPR014001 -
Car05g01947 617 Pfam Helicase conserved C-terminal domain 389 504 IPR001650 -
Car05g01947 617 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 53 580 - -
Car05g01947 617 CDD DEADc_DDX3_DDX4 150 371 IPR044763 GO:0003724|GO:0005524
Car05g01947 617 MobiDBLite consensus disorder prediction 46 64 - -
Car05g01947 617 Gene3D - 104 367 IPR027417 -
Car05g01947 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 520 IPR027417 -
Car05g01947 617 SMART helicmild6 423 504 IPR001650 -
Car05g01947 617 MobiDBLite consensus disorder prediction 1 124 - -
Car05g01947 617 Pfam DEAD/DEAH box helicase 173 354 IPR011545 GO:0003676|GO:0005524
Car05g01947 617 Coils Coil 514 534 - -
Car05g01947 617 MobiDBLite consensus disorder prediction 1 31 - -
Car05g01947 617 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 580 - -
Car05g01947 617 CDD SF2_C_DEAD 377 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01947 Car-Chr5 64753449 64760348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01947 138 536 Eukaryotic Initiation Factors Gene Family AT3G19760 32.000 6.75e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01947 K11594 - gmx:100795756 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01947 05 64753449 64760348 Car05g01947 05 64753449 64760348 ECH