Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01938 ATGAGGAATCCTTCGTcaacagaaacaaattcaagtaagaagaagaagaagaagaatagtaccaacaccacaacaacaacaactactacaacaccaTGTTGCAGCAAAGTAGGGTTAAAGAGAGGACCATGGACATCAGAAGAAGACGAGATATTATCACAATACATCAACAAAGAAGGTGAAGGTCGTTGGAGAACTCTCCCTAAAAGAGCCGGACTTCTCCGTTGCGGTAAAAGCTGTCGTCTCCGTTGGATGAATTATCTTCGTCCGTCCGTCAAACGCGGTCAGATCGCTCCCGATGAAGAAGATCTCATCCTCCGCCTCCACCGTCTTCTCGGCAACAGGTGGTCATTGATAGCTGGGAGAATTCCAGGAAGAACTGATAATGAAATTAAAAACTATTGGAACacacatctcagcaagaaactcatcagtcaagggattgaTCCAAGAACACATAAGCCTCTTGATAATCcttcttcatcttcttcttcCAAACCTTCTCCTTCGTTAATCGTACCAAATATTATTAATAATCACCAAATTACCACTCCTAATTTTACATCTTCTACTCCTCCTCATCAGCATCATCAACTTATTGCTACTAACAAAGAATCTCAAACTTGCCGTAATGATGATCAAATATTGTGTCAATATCATGATTATTATCCCGATCAACTGGTTAATAATAATTATAGTGATGATATGCTTATAACCACTTCGAACAACAACTCCACTATGAATATGAATAATAATGATGATGTATTTAGTTCTTTTCTTGATTCTTTGATCAACGAAGAGGCTTTTGCTGCACATCGTAACGTTCTTCTTCAACCTGAGAATGATCCTTTGATCTCATCTGCACCAACACCAGCTTTGTGGGGATCTCCACTCATGTCTTCTAATTTCATCCAAAATGATAACTCACCCAACCAAGATCAAGGAGCTTCATCATGCATATAG 963 0.3396 MRNPSSTETNSSKKKKKKNSTNTTTTTTTTTPCCSKVGLKRGPWTSEEDEILSQYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLDNPSSSSSSKPSPSLIVPNIINNHQITTPNFTSSTPPHQHHQLIATNKESQTCRNDDQILCQYHDYYPDQLVNNNYSDDMLITTSNNNSTMNMNNNDDVFSSFLDSLINEEAFAAHRNVLLQPENDPLISSAPTPALWGSPLMSSNFIQNDNSPNQDQGASSCI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01938 320 MobiDBLite consensus disorder prediction 146 173 - -
Car05g01938 320 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 24 289 - -
Car05g01938 320 MobiDBLite consensus disorder prediction 155 173 - -
Car05g01938 320 CDD SANT 99 139 IPR001005 -
Car05g01938 320 ProSiteProfiles Myb-like domain profile. 36 88 IPR001005 -
Car05g01938 320 CDD SANT 43 88 IPR001005 -
Car05g01938 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
Car05g01938 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 88 IPR017930 -
Car05g01938 320 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Car05g01938 320 SUPERFAMILY Homeodomain-like 38 135 IPR009057 -
Car05g01938 320 SMART sant 40 90 IPR001005 -
Car05g01938 320 SMART sant 93 141 IPR001005 -
Car05g01938 320 Gene3D - 38 94 - -
Car05g01938 320 MobiDBLite consensus disorder prediction 1 32 - -
Car05g01938 320 Gene3D - 98 168 - -
Car05g01938 320 Pfam Myb-like DNA-binding domain 98 139 IPR001005 -
Car05g01938 320 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Car05g01938 320 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 24 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01938 Car-Chr5 64685097 64687036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01938 26 157 MYB Transcription Factor Family AT3G13540 84.848 7.65e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g01938 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01938 K09422 - twl:119993391 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01938 05 64685097 64687036 Car05g01938 05 64685097 64687036 ECH