Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01924 ATGATGAGTCAGTTCCATTTCGAAATTCATCTTCAGCTCTCACTGATCCCAAAACCAAAACCCCTACCCTACAATTGCATTGGTACCTCTTCTCGACAACAAGCACAAAATCAGCACCTTCAATCCATGTTGGCCGTGGTCAAGGTTTCAACATATCAAGCAAAAGGAAATATGACGGTGAATTTACCTGGGACAGAAGAAGCTGCTGAGCCAACAGCTTTACCTCCATCACCTCCTGATGTGCTGCCTAATATAGAAACAGAACAAATAGCTCGCTCATCCTATTCTATTATCAGTAGGCCTAGTGTTGGAACCACAGGAAAACGCATACCTTTGCTTGTAAATCTCTTCAAAGTTGCCGCTGATGCTACAGATGCAACCTTTTTCCAGTATAGTGTTACTATCACTTCGGAAGATAAAAGAGCCGTAGAAAGCAAGGGCATTGGGAGAAAACTGATTGATAGGCTTCACCAAACATACTCTTCTGAACTTGGTGGCAAAAGCTTTGCATACGATGGAGCAAGAACTTTGTACACAGATGCATTGAGGGTGCTCGATGTTGTGCTGAGGCAGCAGGCAGCTAACAGAGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCAAGGAATTTCATCGATGTTGGAGGTGGAGTAACAGGAGTTCGGGGTTTTCATTCCAGTTTTCGTCTTACACAGGGAGGATTGTCTCTTAATATGGATGTATCCACAACAATGATCGTAAAACCTGGACCTGTAATTGATTTTCTCCTATCCAACCAGAATGTGAAGGAACCTCGTTATATTGACTGGGCAAAGGCGAAAAGAATGCTTAAAAATTTAAGGATACGTGCTAGTCATCGCAATCAAGAATTTAAAATTTTTGGCTTGAGTGAGAAACCCTGCATTCAACAACTTTTTAGTATGAAGTTAAAAAATGGAGAAGACAATGATGGGGAGCAGACAGTGGATGTTACTGTATATGAGTATTTTTCTGAACACCGCGGCATTGAGCTGATATCTTCTGCTTACCTTCCGTGTCTTGATGTTGGGAAGCCAAATCGGCCCATCTTTTTTCCCCTGGAGCTATGTTCACTTGTTCCCCTCCAGCGGTATACAAAGGCATTATCACCTGTCCAAAGAACATCTTTAGTAGAAAAGTCACGCCAGAAGCCTCATGAAAGAATCAAAATTCTGACAAATGCTATAGGAAATTCTTGCTATGATGATGATGCTGTTCTTGCGGCATGTGGCATTTCTGTCAACAAGCAATTTACTCCAGTTGAAGGTCGAGTTCTTGAGACCCCAAAGTTGAAGGTAGGTAAGAATGAGGACTGCTTCCCCAATAATGGAAGGTGGAACTTTAATAAGAAGACACTTCTACGACCATCAGATATTGATTATTGGGCTGTTGTCAACTTTTCTGCACGTTGTGATACTAGTTACTTAACAAGAGAGCTGATCAAATGTGGAATGAGCAAGGGAATTAATATTGAACGGCCATATTCTTTAATAGAGGAAGAAGCACTAATGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTGTCATCAAAACTTACTAAAGAACCCGACTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAAGAAGTGCCTGAGTGAAGTTGGTGTTGTCACACAGTGCATTTCCCCTCTCAAGATCACTGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTGCTGGCACTAGAGCATTCTGGGCATCTTCCCTTGATTAAAGATACCCCAACAATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCAATCAGATATTCCATCAATAGCAGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCAAGGTATAGAGCATCTGTGAGAACACAGTCACCTAAGGTAGAGATGATTGATGCTCTATTCAAACCTTTGGATAATGGGAATGATGACGGCATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCAAGTAATGGAAGCAAACCAACTCAAATTATTCTCTTCAGGGATGGAGTTGGTGAATCACAATTTAATCAGGTTTTGAATATGGAGCTTAACCAGATAATAAAGGCCTATGAACATCTTGAGGAGGTTGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCACCATACAAAGCTGTTTCAAGCTAATGCTCAGGAAAATGTTCCTCCTGGGACCGTCGTCGACACAAAAATCGTGCATCCAAGAAATTACGATTTCTACATGTGTACTCACGCTGGAATGATTGGAACATCTAGGCCTGTACATTATCACGTGTTGCTTGACGAAATTGGATTCTCACCAGATGGCTTGCAAAATTTGATCAATTCGCTGTGTTACGTGAACCAAAGGAGCACAAATGCAACCTCAATTGTGGCACCTATATGCTATGCCCACCATGCTGCAGCTCAAATGGGACAGTTTCTGAATTTTGATGATTTATCAGAAGCATCTTTAACTCCTGATTCCGAGGGAAACGTCCCCATTCCAGAGCTTCCGAGATTGCATAAAAATGTCAAGACCTCCATGTTCTTCTGTTGA 2649 0.4137 MMSQFHFEIHLQLSLIPKPKPLPYNCIGTSSRQQAQNQHLQSMLAVVKVSTYQAKGNMTVNLPGTEEAAEPTALPPSPPDVLPNIETEQIARSSYSIISRPSVGTTGKRIPLLVNLFKVAADATDATFFQYSVTITSEDKRAVESKGIGRKLIDRLHQTYSSELGGKSFAYDGARTLYTDALRVLDVVLRQQAANRGCLLVRQSFFHDDSRNFIDVGGGVTGVRGFHSSFRLTQGGLSLNMDVSTTMIVKPGPVIDFLLSNQNVKEPRYIDWAKAKRMLKNLRIRASHRNQEFKIFGLSEKPCIQQLFSMKLKNGEDNDGEQTVDVTVYEYFSEHRGIELISSAYLPCLDVGKPNRPIFFPLELCSLVPLQRYTKALSPVQRTSLVEKSRQKPHERIKILTNAIGNSCYDDDAVLAACGISVNKQFTPVEGRVLETPKLKVGKNEDCFPNNGRWNFNKKTLLRPSDIDYWAVVNFSARCDTSYLTRELIKCGMSKGINIERPYSLIEEEALMRKSNPVARVEKMFDLLSSKLTKEPDLILCVLPERKNCDIYGPWKKKCLSEVGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLALEHSGHLPLIKDTPTMILGMDVSHGSPGQSDIPSIAAVVGSRCWPLISRYRASVRTQSPKVEMIDALFKPLDNGNDDGIIRELLLDFYSSSNGSKPTQIILFRDGVGESQFNQVLNMELNQIIKAYEHLEEVDVPKFTVIVAQKNHHTKLFQANAQENVPPGTVVDTKIVHPRNYDFYMCTHAGMIGTSRPVHYHVLLDEIGFSPDGLQNLINSLCYVNQRSTNATSIVAPICYAHHAAAQMGQFLNFDDLSEASLTPDSEGNVPIPELPRLHKNVKTSMFFC 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01924 882 Gene3D - 433 599 - -
Car05g01924 882 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 90 179 - -
Car05g01924 882 CDD Piwi_ago-like 414 840 IPR045246 -
Car05g01924 882 SUPERFAMILY PAZ domain 246 407 IPR036085 GO:0005515
Car05g01924 882 PANTHER PROTEIN ARGONAUTE 6 90 179 - -
Car05g01924 882 SUPERFAMILY Ribonuclease H-like 522 846 IPR012337 -
Car05g01924 882 Pfam N-terminal domain of argonaute 108 179 IPR032474 -
Car05g01924 882 SMART Piwi_a_2 538 846 IPR003165 GO:0003676
Car05g01924 882 Pfam Argonaute linker 1 domain 201 249 IPR014811 -
Car05g01924 882 ProSiteProfiles PAZ domain profile. 276 369 IPR003100 GO:0005515
Car05g01924 882 Pfam Piwi domain 538 845 IPR003165 GO:0003676
Car05g01924 882 PANTHER PROTEIN ARGONAUTE 6 180 881 - -
Car05g01924 882 Coils Coil 711 731 - -
Car05g01924 882 Gene3D - 605 882 IPR036397 GO:0003676
Car05g01924 882 CDD PAZ_argonaute_like 251 368 - -
Car05g01924 882 Pfam Argonaute linker 2 domain 395 440 IPR032472 -
Car05g01924 882 SMART DUF1785_2 199 251 IPR014811 -
Car05g01924 882 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 180 881 - -
Car05g01924 882 Gene3D paz domain 245 373 - -
Car05g01924 882 ProSiteProfiles Piwi domain profile. 538 846 IPR003165 GO:0003676
Car05g01924 882 Pfam PAZ domain 255 385 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01924 Car-Chr5 64508854 64516920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01924 127 882 Eukaryotic Initiation Factors Gene Family AT5G43810 35.786 1.53e-143 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01924 K11593 - gmx:100778875 1166.37