Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01921 ATGATGAGTCCGTTCCATTTCGAAATTCCAAAACCCAACCCTACAATTGCATTGCTACCTCTTCTCGACAACAAGCACAAAATCAGCACCTTCAATCCATGTTGGCCGTACGAGTGTGATTTGCATGGAGTGGTCAAGGTTTCCACATCTCAAGCAAAAGGAAATATGACGGTGAATTTACCTGGGATAGAAGAAGCTGCCAAGCCAACAGATTTACCTCCATCACCTCCTGATGTGATGCCTAATATAGAAACAGAACAAATAGCTCGCTCTTCCTATTCTATTATCAGTAGGCCTAGTGTTGGGACCACAGGAAAACGCATACCTTTGCTTGTAAATCTCTTCAAAGTTGCCGCTGATGCTACAGATGCAACCTTTTTCCAGTATAGTGTTACTATCACTTCGGAAGATAAAAGTGCCGTAGAAAGCAAGGGCATTGGGAGAAAACTGATTGATAGGCTTCACCCAACATATTCTTCTGAACTTGGTGGAAAAAGCTTAGCGTATGATGGAGCAGGAACTTTGTACACAGTGGGTCCTCTTCCACATAATAAATTTGAGTTTAAATTATTACTTGAGCAATCATTTGCAAAGTGCAGTAGTACTGAGAGTCCTGGTGCTAATGGAAGCCCTCCTGAGGAAAATAAAAGGTCAAAACGTTCTTTTCAGTCAAAGACATTCACGGATGCATTGAGGGTGCTTGATGTTGTGCTGAGGCAGCGGGCAGCTAACAGAGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCAAGGAATTTCATCGATGTTGGAGGTGGAGTAACAGGAGTTCGGGGTTTTCATTCCAGTTTTCGTCTTACACAGGGAGGATTGTCTCTTAATATGGATGTATCCACAACAATGATCGTAAAACCTGGACCTGTAATTGATTTTCTCCTATCCAACCAGAATGTGAAGGAGCCTCGTTATATTGACTGGGCAAAGGCGAAAAGAATGCTTAAAAATTTAAGGATACGTGCTAGTCATCGCAATCAAGAATTTAAAATTTCTGGCTTGAGTGAGAAACCCTGCATTCAACAACTTTTTAGTATGAAGTTAAAAAATGGAGAAAACAATAATGGGGAGCAGACAGTGGATGTTACTGTATATGAGTATTTTTCTGAACACCGCGGCATTGAGCTGATCTCTTCTGCTTACCTTCCGTGTCTTGATGTTGGGAAGCCAAATCGGCCCATCTTTTTTCCCCTGGAGCTATGTTCACTTGTTCCCCTCCAGCGGTATACAAAGGCATTATCACCTGTCCAAAGAACATCTTTAGTAGAAAAATCACGCCAGAAGCCTCATGAAAGAATCAAAATTCTGACAAATGCTATAGGAAATTCTTGCTACGATGATGATGCTGTTCTTGCGGCATGTGGCATTTCTGTCGACAAGCAATTTACTCCAGTTGAAGGTCGAGTTCTTGAGACGCCAAAGTTGAAGGTAGGTAAGAATGAGGACTGCTTCCCCAATAATGGAAGGTGGAACTTTAATAAGAAGACACTTCTACGACCATCACATATTGATTATTGGGCTGTTGTCAACTTTTCGGCACGTTGTGATACTAGTTACTTAACAAGAGAGCTGATCAAATGTGGAATGAGCAAGGGAATTAATATTGAACGGCCATATTCTTTAATAGAGGAAGAAGCACTAATGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTGTCATCAAAACTTACTAAAGAACCCGACTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAAGAAGTGCCTGAGTGAAGTTGGTGTTGTCACACAGTGCATTTCCCCTCTCAAGATCACTGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTGCTGGCACTAGAGCATTCTGGGCATCTTCCCTTGATTAAAGATACCCCAACAATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCAATCAGATATTCCATCAATAGCAGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCAAGGTATAGAGCATCTGTGAGAACACAGTCACCTAAGGCAGAGATGATTGATGCTCTATTCAAACCTTTGGATAATGGGAATGATGATGGCATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCAAGTAATGGATGCAAACCAACTCAAATTATTCTCTTCAGGGATGGAGTTGGTGAATCACAATTTAATCAGGTTTTGAATATGGAGCTTAACCAGATAATAAAGGCCTATGAACATCTTGAGGAGGTTGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCACCATACAAAGCTGTTTCAAGCTAATGCTCAGGAAAATGTTCCTCCTGGGACCGTCGTCGACACAAAAATCGTGCATCCAAGAAATTACGATTTCTACATGTGTACTCACGCTGGAATGATTGGAACATCTAGGCCTGTACACTATCACGTGTTGCTTGACGAAATTGGATTCTCACCAGATGGCTTGCAAAATTTGATCAATTCGCTGTGTTACGTGAACCAAAGGAGCACAAATGCAACCTCAATTGTGGCACCTATATGCTATGCCCACCACGCTGCAGCTCAAATGGGACAGTTTCTGAATTTTGATGATTTATCAGAAGTATCTTCAACTCCTGATTCAGAGGGAAACGTCCCCATTCTAGAGCTTCCAAGATTGCATAAAAATGTCAAGACCTCCATGTTCTTCTGTTGA 2796 0.4131 MMSPFHFEIPKPNPTIALLPLLDNKHKISTFNPCWPYECDLHGVVKVSTSQAKGNMTVNLPGIEEAAKPTDLPPSPPDVMPNIETEQIARSSYSIISRPSVGTTGKRIPLLVNLFKVAADATDATFFQYSVTITSEDKSAVESKGIGRKLIDRLHPTYSSELGGKSLAYDGAGTLYTVGPLPHNKFEFKLLLEQSFAKCSSTESPGANGSPPEENKRSKRSFQSKTFTDALRVLDVVLRQRAANRGCLLVRQSFFHDDSRNFIDVGGGVTGVRGFHSSFRLTQGGLSLNMDVSTTMIVKPGPVIDFLLSNQNVKEPRYIDWAKAKRMLKNLRIRASHRNQEFKISGLSEKPCIQQLFSMKLKNGENNNGEQTVDVTVYEYFSEHRGIELISSAYLPCLDVGKPNRPIFFPLELCSLVPLQRYTKALSPVQRTSLVEKSRQKPHERIKILTNAIGNSCYDDDAVLAACGISVDKQFTPVEGRVLETPKLKVGKNEDCFPNNGRWNFNKKTLLRPSHIDYWAVVNFSARCDTSYLTRELIKCGMSKGINIERPYSLIEEEALMRKSNPVARVEKMFDLLSSKLTKEPDLILCVLPERKNCDIYGPWKKKCLSEVGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLALEHSGHLPLIKDTPTMILGMDVSHGSPGQSDIPSIAAVVGSRCWPLISRYRASVRTQSPKAEMIDALFKPLDNGNDDGIIRELLLDFYSSSNGCKPTQIILFRDGVGESQFNQVLNMELNQIIKAYEHLEEVDVPKFTVIVAQKNHHTKLFQANAQENVPPGTVVDTKIVHPRNYDFYMCTHAGMIGTSRPVHYHVLLDEIGFSPDGLQNLINSLCYVNQRSTNATSIVAPICYAHHAAAQMGQFLNFDDLSEVSSTPDSEGNVPILELPRLHKNVKTSMFFC 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01921 931 MobiDBLite consensus disorder prediction 201 222 - -
Car05g01921 931 SMART Piwi_a_2 587 895 IPR003165 GO:0003676
Car05g01921 931 ProSiteProfiles PAZ domain profile. 325 418 IPR003100 GO:0005515
Car05g01921 931 ProSiteProfiles Piwi domain profile. 587 895 IPR003165 GO:0003676
Car05g01921 931 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 88 930 - -
Car05g01921 931 Coils Coil 760 780 - -
Car05g01921 931 Pfam PAZ domain 304 434 IPR003100 GO:0005515
Car05g01921 931 Gene3D - 654 931 IPR036397 GO:0003676
Car05g01921 931 SMART DUF1785_2 248 300 IPR014811 -
Car05g01921 931 CDD Piwi_ago-like 463 889 IPR045246 -
Car05g01921 931 CDD PAZ_argonaute_like 300 417 - -
Car05g01921 931 Gene3D paz domain 294 422 - -
Car05g01921 931 SUPERFAMILY PAZ domain 295 456 IPR036085 GO:0005515
Car05g01921 931 Pfam N-terminal domain of argonaute 106 226 IPR032474 -
Car05g01921 931 Gene3D - 482 648 - -
Car05g01921 931 Pfam Argonaute linker 1 domain 250 298 IPR014811 -
Car05g01921 931 Pfam Argonaute linker 2 domain 444 489 IPR032472 -
Car05g01921 931 Pfam Piwi domain 587 894 IPR003165 GO:0003676
Car05g01921 931 PANTHER PROTEIN ARGONAUTE 6 88 930 - -
Car05g01921 931 SUPERFAMILY Ribonuclease H-like 571 895 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01921 Car-Chr5 64485129 64494436 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01921 98 931 Eukaryotic Initiation Factors Gene Family AT1G48410 36.454 6.98e-158 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01921 K11593 - gmx:100778875 1384.39