Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01917 ATGGACGAAACAATGGCAGCAAGATATTGGTGTCACGCGTGTTCTCAAATAGTCAATCCTGTCATGGAAGTGGAGATGAAATGCCCAGTTTGCCAAAGTGGATTTGTTGAAGAAATGAACAGTGCTGCTGGTATCAGCGAGATGCAAGGTATCGGCGAGATGCAAAATATACCAGAAAATGATTTTGGTTCGGATCGTGCTGCCTCCCTTTGGGCACCAATCTTGCTAGGCATGATGAGTAATCCGCGACATCGTCGAAGATTGAGACGAATAGAGCTTGAAAATGACTATAATAGTGGTAGTCGTGATGATGATAATGGTGGTGTAGGCCATTATGATCGAGAGCTCGAGTCTATCCTTCGGAGGAGGAGAAGAAGCTCAGCTACCATTCAGCAACTGCTCCAAGGCATAAGAGCTGGACTGACATCTGAATCACATGAGAATACAGACAGTGATGACCATGTTagagaaagagaaagagaaagagagCATGTAATTTTGATCAATCCTTTTAATCAGACTATTATAGTTCAAGGTTCATATGATTCTAACCGGGATCAAAGTGATATTCATAGCACCATTGGTTCTCTGGGTGACTATTTCGTAGGGCCTGGTTTGGATCTATTGTTACAACATTTGGCTGAGAACGACCCCAATAGGTACGGAACTCCACCCGCCCCGAAGGAAGCTGTTGAAGCTCTACCCACTGTGAAGATCAATGAGAATTTGCAGTGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTTCTGAAGCTAAAGAGATGCCATGTAAACATAGGTTTCATAGTGCATGCATCCTGCCCTGGCTTGAGCTTCATAGTTCTTGTCCAGTTTGCAGGTTTCAATTGCGAGCAGATGAATCTAAGCAAGACTCCGTTGCGTCAAGGAGTAGCAGAAATCAAAGGGAGGATGAAAATACTGTGCATGACAATGCTGAAGGAGACAATGAAGGGAGAAATTCAAGTGGGGGTAGAAGATTCTCATTTCCTTGGCCTTTCAATGGATTATTTtcatcatcatcatcgtcatcatcatcttcTAGTTCAAATGCAAATGGAAATGGTACTCAATCAGAAAGAAGCTGA 1104 0.4112 MDETMAARYWCHACSQIVNPVMEVEMKCPVCQSGFVEEMNSAAGISEMQGIGEMQNIPENDFGSDRAASLWAPILLGMMSNPRHRRRLRRIELENDYNSGSRDDDNGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSESHENTDSDDHVREREREREHVILINPFNQTIIVQGSYDSNRDQSDIHSTIGSLGDYFVGPGLDLLLQHLAENDPNRYGTPPAPKEAVEALPTVKINENLQCSVCLDDFEVGSEAKEMPCKHRFHSACILPWLELHSSCPVCRFQLRADESKQDSVASRSSRNQREDENTVHDNAEGDNEGRNSSGGRRFSFPWPFNGLFSSSSSSSSSSSSNANGNGTQSERS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01917 367 MobiDBLite consensus disorder prediction 296 326 - -
Car05g01917 367 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 345 - -
Car05g01917 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 345 - -
Car05g01917 367 MobiDBLite consensus disorder prediction 137 156 - -
Car05g01917 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 292 IPR013083 -
Car05g01917 367 SUPERFAMILY RING/U-box 234 292 - -
Car05g01917 367 Pfam Ring finger domain 244 286 IPR001841 -
Car05g01917 367 MobiDBLite consensus disorder prediction 339 367 - -
Car05g01917 367 SMART ring_2 245 285 IPR001841 -
Car05g01917 367 MobiDBLite consensus disorder prediction 296 367 - -
Car05g01917 367 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Car05g01917 367 CDD RING-H2_RNF126_like 244 286 - -
Car05g01917 367 ProSiteProfiles Zinc finger RING-type profile. 245 286 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01917 Car-Chr5 64443032 64445455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01917 133 292 C3H Transcription Factor Family AT1G26800 35.802 3.62e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01917 K11982 - gmx:100784876 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01917 05 64443032 64445455 Car05g01917 05 64443032 64445455 ECH