Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01896 ATGGCGCTTAATATGACGGCACGATGTGATGAAATTAGGAATGATGAACAACCAAGTCCCACAGATTTGGTGAAATTGGATATACATACACGTTCTTATTTAGTCAACTCAAATCAAATACACTATGAAACTACCTTCAATCTTAAACCCATAGTTTTCAAGAATGTTTTCCGAGACAAGGGACTAAGTTATCTACAGCAATGTTTTGATGAGGATCCCTTTTTAAAGATGCCTGATAACTTTGAAATAGAAATTGCATATAAGCTTCAAGAATTTTATAATCTTTCTTATGGTTTCGATACTGAAGAAGATGACGACTTTGACCGCGATGAAGAAGAAGTTGAAGTAAATTTACGTCGTCGTGTCTTCCCTTTGATATTGGAGTTAGAGATTCACGAAGATGAAATtgatgatgatgatgatgatgatgatgatgaATTTGAAGAAGATCTTAAAATGGTTCCAGCTTCAAAAAAATTCATTGAGAATATGAAGACATGTGATTTCAATGTTGCAAAAGAGAGAGAAATATTGAGGTGTGTTATTTGTATGAATGAGTTTGATAATGTAAATATTAATAATGAGGTAACGTTATGCACACTGCCATGTAATCATGTGTTCCATCAAAATTGTGCTGTGCAATGGTTACAAACTAGTCATACTTGTCCCTTGTGTCGCTATCCAATGCCTACCAGATGA 699 0.329 MALNMTARCDEIRNDEQPSPTDLVKLDIHTRSYLVNSNQIHYETTFNLKPIVFKNVFRDKGLSYLQQCFDEDPFLKMPDNFEIEIAYKLQEFYNLSYGFDTEEDDDFDRDEEEVEVNLRRRVFPLILELEIHEDEIDDDDDDDDDEFEEDLKMVPASKKFIENMKTCDFNVAKEREILRCVICMNEFDNVNINNEVTLCTLPCNHVFHQNCAVQWLQTSHTCPLCRYPMPTR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01896 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 82 231 - -
Car05g01896 232 PANTHER F6A14.12 PROTEIN-RELATED 82 231 - -
Car05g01896 232 ProSiteProfiles Zinc finger RING-type profile. 180 226 IPR001841 -
Car05g01896 232 SMART ringv_2 179 226 IPR011016 GO:0008270
Car05g01896 232 Pfam Ring finger domain 179 226 IPR001841 -
Car05g01896 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 231 IPR013083 -
Car05g01896 232 SMART ring_2 180 225 IPR001841 -
Car05g01896 232 SUPERFAMILY RING/U-box 179 230 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01896 121 230 C3H Transcription Factor Family AT1G14200 30.827 1.23e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01896 - - cam:101513936 417.927