Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01895 ATGGTTGAAGCATCAGGAATGATGTTCACCAACACCACCAATCTTATTCCTGCTTTTACCCCAACAACATTTCACAGAACCTATCTTGGTCTCTCTCAACCAACTCTCTCACGAAGACACCATATTCACTTTTCAGTTTCAGCCACTCAGAGTCAAACCTCTGCAGCATTGGTGGAAACTATTCCTTGGGGGTGTGAGAATGATTCACTGGAAAATTCATCTTCTCTTCAGACATGGTTGTCAGACTCGGGTCTTCCTTTTCAGAAAATGGCCATTGATAAAGTTGATGTTGGTGAGAGAGGACTTGTTGCTTTGAAGAATATAAGGAAAGGAGAGAAGCTTCTCTTTGTGCCTCCCTCACTTGTTATTACTCCTGATTCTGAGTGGAGCTGTCCGGAAGCTGGCGAAGTATTGAAAAGGAATTCGGTGCCGGATTGGCCGTTGCTTGCAACTTACCTTATAAGTGAAGCTAGCCTCATGAAATCTTCAAGATGGTGCAGTTATATATCGGCCTTACCTCGTCAACCCTACTCACTTCTTTACTGGTCACAAGCGGAACTAGATCGCTACTTGGAAGCTTCACTGATTAGGGAGAGAGCAATTGAAAGGACTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATCGACTCCTTCAAATGGTCGTTTGGCATTCTTTTCTCGCGCATGGTTCGGTTACCCTCGATGGATGGAAAGGTTGCCTTGGTTCCGTGGGCAGATATGTTGAATCATAGTTGTGATGTGGAGACATTTTTGGATTATGATAAAGTGTCGAAGGGAATTGTCTTTACGACAGACCGTCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAATGGAGAGCTTCTACTATCTTATGGATTTGTACCAAAGGAGGGAACTAATCCATGCGATTCAGTTGAGTTGTCACTGTCTCTCAATAAATCTGATGAGTCCTATGAGGAGAAGTTAGAATTGTTGAAGAAGTATGGATTATCAGGATCTCAGTGTTTTCCTGTAAGGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAAAATTTGAAGAGATGGCGGCCGCCGCATCAAATGAAACTACCTCGAACAAGGACTTGAGATATCCCGAAATAGAGGAACAAGCATTGCAATTCATACTAGATAGTTGTGAATCTAGGATCACAAAATACAATAAGTTCTTACAGGTAAGTGGATCACTGGACTTGGATGTGACTTCTCCGAAACAACTCAACCGGAGACTCTTTCTAAAACAGCTAGCCGTCGACTTGTGTACTAGTGAGCGGAGGATACTATTTCGCGCTCAATATATATTGCGAAGAAAAGTGAGGGATATGAGGACTGGTGAACTAAGAGCCTTAAAAATCTTTAATGGGTTCAGGAATCTTTTCAAATGA 1512 0.418 MVEASGMMFTNTTNLIPAFTPTTFHRTYLGLSQPTLSRRHHIHFSVSATQSQTSAALVETIPWGCENDSLENSSSLQTWLSDSGLPFQKMAIDKVDVGERGLVALKNIRKGEKLLFVPPSLVITPDSEWSCPEAGEVLKRNSVPDWPLLATYLISEASLMKSSRWCSYISALPRQPYSLLYWSQAELDRYLEASLIRERAIERTNNVIGTYNDLRLRIFSKYPDFFPEEVFNIDSFKWSFGILFSRMVRLPSMDGKVALVPWADMLNHSCDVETFLDYDKVSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPCDSVELSLSLNKSDESYEEKLELLKKYGLSGSQCFPVRITGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNETTSNKDLRYPEIEEQALQFILDSCESRITKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRAQYILRRKVRDMRTGELRALKIFNGFRNLFK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01895 503 CDD SET_RBCMT 83 318 IPR044431 GO:0016279|GO:0018022
Car05g01895 503 Pfam SET domain 100 304 IPR001214 GO:0005515
Car05g01895 503 Gene3D - 323 492 IPR036464 -
Car05g01895 503 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 36 298 - -
Car05g01895 503 PIRSF RMT_SET 7 500 IPR011192 GO:0009507|GO:0030785
Car05g01895 503 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 499 IPR036464 -
Car05g01895 503 SMART set_7 88 310 IPR001214 GO:0005515
Car05g01895 503 PANTHER - 36 298 - -
Car05g01895 503 ProSiteProfiles SET domain profile. 88 304 IPR001214 GO:0005515
Car05g01895 503 Pfam Rubisco LSMT substrate-binding 337 470 IPR015353 -
Car05g01895 503 Gene3D set domain protein methyltransferase, domain 1 34 317 - -
Car05g01895 503 SUPERFAMILY SET domain 74 321 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01895 Car-Chr5 64118684 64122775 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car05g01895 SET 6.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01895 - - cam:101500121 983.786