Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01892 ATGTCTTCCAGAAAACTCGATAACCCTCACTCCGGCGACGGTGCCAGTCCCGGAAAAATCTTCATCGGAGGGTTAGCCAAAGACACAACATTAGGTCACAAACAAGGAACAATTCATTCATTTTTTATTTTTAAAATTTCACTGTTATTTGTTTCTGACAGTGTTGATTCTGCAGAGACATTCGTGAAGTACTTTGAAAGATACGGAGAGATTACAGATTCCGTTATCATGAAGGATCGACATACGGGTCGACCAAGAGGTTTCGGGTTTATCACTTATGCGGATCCTAACGTCGTTGACCAAGTCATTCAGGAGAATCACATCATCAATGACAAGCAGGTTGAAATCAAGAGGACTATTCCTAAAGGTTCATCACAAACTAATGACTTCAAAACTAAGAAGATTTTTGTTGGTGGCATTCCAACAGCAGTATCTGAAGATGAGCTCAAGAACTTCTTCTCTAAGCATGGGAAGGTTGTGGAGCATGAGATAATACGCGACCACACCACTAAACGATCTCGTGGATTTGGTTTTGTAGTTTTTGACAATGATAAGGTTGTGGATAATTTGCTGGCTGATGGGAACATGATTGATATGGATGGTACTCAGGTTGAGATAAAGAAGGCTGAACCAAAGAAATCCTCAAATTCAGCTTCTCTTCCATCATTTGCTAGTGACTCTAGGGCACGTTCTTACAGTGATGGTTTTGGTGGGTTTGGCGATTCTTATGGAAGTTTTTCTGGTGGAGGTTATGTCCCTGGATCTTATAGATCACTTGGCGGTTTCGGTGGTAGGCTTAGTGATTATGGTGGATATGGAGGTGGAGATGACTTCAGTGGTAGTTTTGGGGGCTATGGGGGCAGTTCTGGTGGTTATGGAGGCTATAGAGGAGAATCTTCATTTGGCTACTCTAGCCGCTATGGGTCCTACATGGGGGGCCTTGGTGGTGGATATAGTGGTGGTGGGTTAGGCCCGTACGGAAGAGGTGTTGGGGGCTATGGAAGTTAtggtggtccaggcactggcggaggttatgattcaggtgctggtgctggttttggtgcGACAGGAGGACTCTATTCTAGTAGGGGAGGTTATGGGGGCAGTAGTCGATACCATCCTTACTCAAGATAG 1134 0.418 MSSRKLDNPHSGDGASPGKIFIGGLAKDTTLGHKQGTIHSFFIFKISLLFVSDSVDSAETFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADPNVVDQVIQENHIINDKQVEIKRTIPKGSSQTNDFKTKKIFVGGIPTAVSEDELKNFFSKHGKVVEHEIIRDHTTKRSRGFGFVVFDNDKVVDNLLADGNMIDMDGTQVEIKKAEPKKSSNSASLPSFASDSRARSYSDGFGGFGDSYGSFSGGGYVPGSYRSLGGFGGRLSDYGGYGGGDDFSGSFGGYGGSSGGYGGYRGESSFGYSSRYGSYMGGLGGGYSGGGLGPYGRGVGGYGSYGGPGTGGGYDSGAGAGFGATGGLYSSRGGYGGSSRYHPYSR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01892 377 SMART rrm1_1 134 207 IPR000504 GO:0003723
Car05g01892 377 SMART rrm1_1 19 117 IPR000504 GO:0003723
Car05g01892 377 SUPERFAMILY RNA-binding domain, RBD 15 124 IPR035979 GO:0003676
Car05g01892 377 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 57 377 - -
Car05g01892 377 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 32 - -
Car05g01892 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 121 IPR000504 GO:0003723
Car05g01892 377 Gene3D - 124 245 IPR012677 -
Car05g01892 377 SUPERFAMILY RNA-binding domain, RBD 128 238 IPR035979 GO:0003676
Car05g01892 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 193 IPR000504 GO:0003723
Car05g01892 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 108 IPR000504 GO:0003723
Car05g01892 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Car05g01892 377 MobiDBLite consensus disorder prediction 213 227 - -
Car05g01892 377 MobiDBLite consensus disorder prediction 207 227 - -
Car05g01892 377 Gene3D - 18 123 IPR012677 -
Car05g01892 377 PANTHER OS08G0320100 PROTEIN 57 377 - -
Car05g01892 377 PANTHER OS08G0320100 PROTEIN 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01892 Car-Chr5 64102854 64104877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01892 65 183 Eukaryotic Initiation Factors Gene Family AT4G34110 30.081 6.57e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01892 K12741 - gmx:100801373 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01892 05 64102854 64104877 Car02g02207 02 52204199 52208972 PCT