Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01890 ATGGGTTATGTATGTGATTTTTGTGGACAACAAAGGTCCATGGTGTACTGCCGATCCGATGCTGCGTGTTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCGAATACGCTCGCTCGAAGACATTCAAGGACTCTTTTATGTGAGAGATGCAGTTCACAACCTGCTTTGGTTAGATGTTCTGAAGAAAAAATTTCACTTTGTCAGAATTGTGATTGGTTGGGCCATGGTAACTCAACATCTTCCACACATAAGAGACAAACAATCAATTGCTACTCGGGTTGTCCTTCATCGGCCGAACTGTCTTCTATTTGGTCTTTTGTGTTAGATATCCCTTCTTTGAGTGAAACTACATGTGAGCAAGAACTTGGTTTCATGAGTATTAATGAGAATAGAAGTGCTTGGGTTGCTCCAAAAAACCAGAATGTTTCTGATTCAGATCAAGTTACTGATTTACCTGATATGGATAAGTCTTGGGCTGGTACATCTTCAAAGCCCGAATCAAGCTCAGAACCGCGTTTACTCGACCATTCACCTGGATCTACCAAAGAATGTGTGCCAAAGTTATACTGTTCTGCAACAAAATGCCCCGAAGAACGTGAAGATAAGGATGATCTGTACGGAGATTTTGATATGGACGAAATGGATATAAATATTGAGAACTATGACGAACTTTTTGGTATGGCCCTTACTCATTCTGAAGAGCTTTTTGAAAACGGTGGATTTAACAGTTTATTTGGGGCAAAGGAGATGTCGGCTGGAGATTCCGATTGTCAAGATGCTATTGCTGCTGAGGGTTCATCAGTTGGACATTTCAATGCAACACAGCCAGCATGCAGCAATGCAGCATCTGCAGATTCCATATTGAGTACTAAAACAGAACCGAATCTTTGTATCACGGCAAAGCAAGCTCAATCAAACCTTTCTTTTTCCGGTATTAATGAAGAGAGTGGTGGTGCTGGAGACTATCAAGATTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAACCTCCATGGTTAAACACTTGTCCTGAGAATGACCTACAACTTCAATCTGCAAACCGCAGTAGCGCTGTTATGCGATATAAGGAAAAGAAGAAAACACGCAAGTTTGACAAGAGAGTGAGGTATGCATCTCGCAAGGAAAGAGCTGATGTCCGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCCGGCGATGTCTACGATTATGACCCTTTGAGCCAAACCAGAAGCTACTGA 1239 0.4245 MGYVCDFCGQQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKISLCQNCDWLGHGNSTSSTHKRQTINCYSGCPSSAELSSIWSFVLDIPSLSETTCEQELGFMSINENRSAWVAPKNQNVSDSDQVTDLPDMDKSWAGTSSKPESSSEPRLLDHSPGSTKECVPKLYCSATKCPEEREDKDDLYGDFDMDEMDINIENYDELFGMALTHSEELFENGGFNSLFGAKEMSAGDSDCQDAIAAEGSSVGHFNATQPACSNAASADSILSTKTEPNLCITAKQAQSNLSFSGINEESGGAGDYQDCGASSMLLMGEPPWLNTCPENDLQLQSANRSSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGDVYDYDPLSQTRSY 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01890 412 CDD Bbox1_BBX-like 4 47 - -
Car05g01890 412 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Car05g01890 412 SMART bboxneu5 4 47 IPR000315 GO:0008270
Car05g01890 412 SMART bboxneu5 48 89 IPR000315 GO:0008270
Car05g01890 412 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Car05g01890 412 CDD Bbox1_BBX-like 47 89 - -
Car05g01890 412 Pfam CCT motif 355 397 IPR010402 GO:0005515
Car05g01890 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 412 - -
Car05g01890 412 MobiDBLite consensus disorder prediction 139 182 - -
Car05g01890 412 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car05g01890 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01890 Car-Chr5 64060148 64063710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01890 1 412 C2C2-CO-like Transcription Factor Family AT3G07650 53.538 2.70e-145 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Car05g01890 CCT 4.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01890 - - pvu:PHAVU_006G005200g 654.825