Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01889 ATGGGCCTATCAAGTCTTCCAGCACCATCTGAAGGAATGTTATGCATAATTCTTGTTAACACTGCCATGTCAATATCCATATTCAAAGGCATTATTAGGACTATCCTGCACATTGTTGGTATCATTGCTtcaccatcatcatcatcttcaacttcctcTCCTTCACAAGATTATACCTCACAAAACTCACATGACTCATTTGAATTCCATCTAAGTCCTTCAGATGATTTCATTGAAGAGTTCAGAAACAGGACACCAACACTTAGGTTTGACAGTGTTCGTAGTAGCTGCAAAGAACCTGAACATGATTGTTCAGTTTGTCTCACACAATTTGAACCTGAATCAGAGATAAATTGTTTGTCTTGTGGCCATCTTTTTCATAAAGTGTGCTTGGAGAAGTGGTTGGACTATTGGAACATTACATGTCCACTTTGTAGGACTCCTTTAGTTCCTGAAGATGATGCTTTTTGCTTTTGGTGA 480 0.3604 MGLSSLPAPSEGMLCIILVNTAMSISIFKGIIRTILHIVGIIASPSSSSSTSSPSQDYTSQNSHDSFEFHLSPSDDFIEEFRNRTPTLRFDSVRSSCKEPEHDCSVCLTQFEPESEINCLSCGHLFHKVCLEKWLDYWNITCPLCRTPLVPEDDAFCFW 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01889 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 151 IPR013083 -
Car05g01889 159 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Car05g01889 159 PANTHER - 1 159 IPR044249 -
Car05g01889 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 159 - -
Car05g01889 159 SUPERFAMILY RING/U-box 96 152 - -
Car05g01889 159 Pfam Ring finger domain 103 146 IPR001841 -
Car05g01889 159 MobiDBLite consensus disorder prediction 46 65 - -
Car05g01889 159 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01889 Car-Chr5 64050050 64052005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01889 1 153 C3H Transcription Factor Family AT2G04240 63.226 1.20e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01889 K16285 - gmx:100786803 252.292