Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01880 ATGAGAAAGAAAAGCGTTTGTGGTGGCCGCAGGCGTAGTACTACTCCTTCTGTGTCTCCTCTCATCTCTCCCATTCCTCCACTCTCTACCTCCCAGGACGACAACATTGCAACCATCTACGacagcgacaccaacaccaacaccaacgacgaccacACGCACGCTCCACTCCCCGATACCGAACCTGTAGAGTCCTTCGACGATAACACTTGCATAACATGCAACCAAAGCGGAGGACCATTGCTCGTATGTGCCCAAACCGATTGCCCCGTTACTGTCCACGTCACCTGCATCGGTTCCGAACCTAAATTCGATTATTCTGGTAAGTTCTACTGTCCCTACTGTTCCTACAAGCGAGCGTTGAATAAGAGTAGAGAACTTAGAGAGAAAGTTATTCTAGCGAAGAAAGCTCTTTCAAGTTTTTTGGAAAAAGACCAAACGCTGCGTAAGGATAAGGATCACCAACCTGTTCAACCGGTTCAGGATCACGCCAACCGGGATGACCCGGTAGTTTCTCATTCTGGGGAGGGAAAACAACACAATAATAAtgatcatgatcttgatcgtgatcgtgatcgtgatcgtgaAAATGAAAATGATAAAGGAAAAATTTCTGTAACTAGTAGTTCCGTGAGCGAAACTAATGATTCGGATTCTAACTCCATTGCGGTGAAGAAAGGTTATCCCAATGCTAAACGCAAGGTTGTTTCTGTGAAAAAAACCTTGTTATGGGAACAGAAAACCGGCGGTGCCAGTGATGTGGATGACGAGGAAGTTACCAGCTCCAGAACTTTAAAACTACAGAAGCAAAACAAAAATCAGAATCTGCTGACTGGAAAGCGTAGGAGATTGTTTTGGACAGCTGAAGAAGAAAAAACTCTCAAGGAAGGAGTGTTGAAGTTCTCAACGGGAAATCAGAATATCCCTTGGAGAAAAATTTTAGAATTTGGTTGTCGTGTGTTTGATAATACTCGCACTCCTGTTGATCTCAAGGATAAATGGAGGAACATGACCTCCAAGGAAGGAAACTAG 1032 0.4099 MRKKSVCGGRRRSTTPSVSPLISPIPPLSTSQDDNIATIYDSDTNTNTNDDHTHAPLPDTEPVESFDDNTCITCNQSGGPLLVCAQTDCPVTVHVTCIGSEPKFDYSGKFYCPYCSYKRALNKSRELREKVILAKKALSSFLEKDQTLRKDKDHQPVQPVQDHANRDDPVVSHSGEGKQHNNNDHDLDRDRDRDRENENDKGKISVTSSSVSETNDSDSNSIAVKKGYPNAKRKVVSVKKTLLWEQKTGGASDVDDEEVTSSRTLKLQKQNKNQNLLTGKRRRLFWTAEEEKTLKEGVLKFSTGNQNIPWRKILEFGCRVFDNTRTPVDLKDKWRNMTSKEGN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01880 343 CDD SANT_TRF 286 338 - -
Car05g01880 343 Gene3D - 286 343 - -
Car05g01880 343 SUPERFAMILY Homeodomain-like 285 339 IPR009057 -
Car05g01880 343 MobiDBLite consensus disorder prediction 1 62 - -
Car05g01880 343 SMART sant 282 340 IPR001005 -
Car05g01880 343 Pfam Myb-like DNA-binding domain 286 337 IPR001005 -
Car05g01880 343 SUPERFAMILY FYVE/PHD zinc finger 62 120 IPR011011 -
Car05g01880 343 ProSiteProfiles Myb-like domain profile. 278 338 IPR001005 -
Car05g01880 343 SMART PHD_3 70 116 IPR001965 -
Car05g01880 343 MobiDBLite consensus disorder prediction 203 224 - -
Car05g01880 343 MobiDBLite consensus disorder prediction 10 53 - -
Car05g01880 343 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 34 218 - -
Car05g01880 343 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 260 342 - -
Car05g01880 343 CDD PHD_SF 70 115 - -
Car05g01880 343 ProSitePatterns Zinc finger PHD-type signature. 71 115 IPR019786 -
Car05g01880 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 163 IPR013083 -
Car05g01880 343 ProSiteProfiles Zinc finger PHD-type profile. 68 118 IPR019787 -
Car05g01880 343 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 34 218 - -
Car05g01880 343 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 260 342 - -
Car05g01880 343 MobiDBLite consensus disorder prediction 146 224 - -
Car05g01880 343 MobiDBLite consensus disorder prediction 146 202 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01880 286 338 Single Myb Histone (SMH) Gene Family AT5G67580 51.786 3.25e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car05g01880 Myb_DNA-binding 2.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01880 - - mtr:MTR_3g082160 385.956