Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01868 ATGGATTCAAAGGAAGGTGTTGAACTTCAAACTGATGAAGCTTCAATGATGTCAGATTCTTCTCTTCTTCATCATCAGTCCAGAAGACCTAGCCTCTCATCTCTACAGATACCAGCAAGGTCACTAGAAAGTGCATTAGCTTCTTCTACTAAGACAGATGGTCCTACATTGTCAAGTCCAGGTTCCACTAGAGGACTTCCCCCAAGGCCACATTCTACAAAAGTCAAGTCCTCTATGAGAAATTTACTTTCTGATAGGAGCTTTAGGACAAAAACTTGTTCACAACAAGATATTGAAAAGACAGTTCTCATTGTTCCTGATTCTTTATCATCACACGGTCCTCTGGATAAGCCTTCAACTTCAAGGTCCCTTTCACTTAATAAGATTTTGTTCCCTTCATCAACAAAAGCTGCACATTCATTACCGGTTACTCCAATTGCAAATTCAGATGCGGAGAATGTATACGGAAGACATGTTGTGGGAAATTCTGATTTAAATAAAATGAAAGTGAATAAGCATATGACTCGATCACTTTCAGTTCCGGTTAATGTCAAAGTCACTAATTTAAGGCCTACAGATGCTAGGTGTCTGGTTCGTGTAATTTCAGCGAGACCACATCCAACAACTACTGATGGCATTTCAACCCACAGTGATTCAATGCAAGACATTGCCATAGAAGATGCTTCTGAGGATATTCCAGAAGAAGAAGCAGTCTGCAGGATTTGTTTGGTGGAGCTCGGGGAAGGGGGAAATACTCTACGGATGGACTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACCTGTGATGTCTGCAAGCAGGATGTCCGAAACCTTCCAGTAACACTCTTGAAAATTCCTAATCCTCCAACCGTTGTTCGGCATTCATTGATTTCACAACAGCAGAGAGAAGTAACTACTTACAGGATCTGGCAGGATGTACCAGTGCTTGTCTTGGTCAGCATGCTTGCGTACTTTTGCTTTCTGGAGGAACTACTGTGTACCAGGTTTCAGATTTGGGCCCACGTGCTCTTGCCATTTCATTGCCTTTCTCCTGCATTTTAG 1107 0.421 MDSKEGVELQTDEASMMSDSSLLHHQSRRPSLSSLQIPARSLESALASSTKTDGPTLSSPGSTRGLPPRPHSTKVKSSMRNLLSDRSFRTKTCSQQDIEKTVLIVPDSLSSHGPLDKPSTSRSLSLNKILFPSSTKAAHSLPVTPIANSDAENVYGRHVVGNSDLNKMKVNKHMTRSLSVPVNVKVTNLRPTDARCLVRVISARPHPTTTDGISTHSDSMQDIAIEDASEDIPEEEAVCRICLVELGEGGNTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKIPNPPTVVRHSLISQQQREVTTYRIWQDVPVLVLVSMLAYFCFLEELLCTRFQIWAHVLLPFHCLSPAF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01868 368 MobiDBLite consensus disorder prediction 1 80 - -
Car05g01868 368 MobiDBLite consensus disorder prediction 13 66 - -
Car05g01868 368 CDD RING_CH-C4HC3_MARCH 239 287 - -
Car05g01868 368 PANTHER OS02G0165000 PROTEIN 19 363 - -
Car05g01868 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 294 IPR013083 -
Car05g01868 368 SMART ringv_2 238 287 IPR011016 GO:0008270
Car05g01868 368 Pfam RING-variant domain 239 286 IPR011016 GO:0008270
Car05g01868 368 SUPERFAMILY RING/U-box 235 290 - -
Car05g01868 368 ProSiteProfiles Zinc finger RING-CH-type profile. 231 293 IPR011016 GO:0008270
Car05g01868 368 PANTHER OS02G0165000 PROTEIN 19 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01868 Car-Chr5 63837712 63842662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01868 233 294 C3H Transcription Factor Family AT2G37950 47.692 5.62e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01868 - - pvu:PHAVU_006G002500g 467.233