Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01855 ATGTATTATTTGTATTTAATAAATTGTAAAAATGTGGCAGTGGCAGGAGGATTAATTATGAATATAAAGAAAGATGATATGATGATGGGAAGTGTTCCACAAAGTACAATTACAACTACAAGTTCTCCTCCTCCACATATGTATCCAGAGGAACTTCAGCTTAAGCTATACCAAGCTTTCATATTCTCAATTCCTATACTTTTTTCAATTATTCTTTTTCTCCTTTTTTACTTGTTCTACCTCAAGAGAAGAGCTTCCTCTTTCTCTCCACATTTACTTCCTAGGATCAATCCTCCTTCAATTACCTATCGTTATTATTCCTCTTCCTCTCCTCGTCGTTTGGATTTGACCGTACAATTGGACAAACTTCCAAGAATTTTGTTTGATGAGGATTTACAAGCAAGGGATTCATTATGTTGTGTTTGCTTGGGAGAATTTGAGGTAAAAGAAGAGGTACTACAGATTCCACATTGCAAGCATGTGTTTCACATCGATTGCATACATCATTGGCTACAATCAAATTCCACTTGTCCACTTTGTAGATGTTCCATCATTCCCACTACCACCAACAAGTTCCTTAACCCACAACCGCCTATTAATATTATTATATCGGACACACCCCACCAAGGTCCTATCAATTCAGATTCTCCATTACAAATTCCATCATCATTGTCACTTCATAGAGAAGATGTTGATGATGAAGCTGGTGCTTCCTCAAACATTATGTCAAGGGAATGA 738 0.3659 MYYLYLINCKNVAVAGGLIMNIKKDDMMMGSVPQSTITTTSSPPPHMYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSFSPHLLPRINPPSITYRYYSSSSPRRLDLTVQLDKLPRILFDEDLQARDSLCCVCLGEFEVKEEVLQIPHCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTTTNKFLNPQPPINIIISDTPHQGPINSDSPLQIPSSLSLHREDVDDEAGASSNIMSRE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01855 245 SUPERFAMILY RING/U-box 119 188 - -
Car05g01855 245 Pfam Ring finger domain 139 181 IPR001841 -
Car05g01855 245 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Car05g01855 245 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 39 199 - -
Car05g01855 245 SMART ring_2 139 180 IPR001841 -
Car05g01855 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 186 IPR013083 -
Car05g01855 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 39 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01855 Car-Chr5 63722698 63725968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01855 45 245 C3H Transcription Factor Family AT4G10150 32.212 2.40e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01855 K19039 - gmx:100794298 268.085