Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01853 ATGACGGAGGTGGCCAGATCAGTGGTTCACGAGGTTCTAGGAGATGGAATCGTCGACGTCGATGAACCAATCATCAGTTACATCGTCAACGTCCTCGCCGACGAAGACTTCGATTTCGGACTCGACGGCGAAGGCGCTTTTGATGCTCTTGGAGAACTCCTCGTCGCCGCCGGATGTGTCCACGACTTCCCCGAGTGTCGCTCCGTATGCAGCATACTTTCGGAAAAGTTTGGAAAGCGCGGTTTGGTGAAGGCGAAACCAACTGTACGAAGCCTCGCCACGCCGTTTCGTATGAACGAGGGTTTGGACGATGGTGAAGCTCCCAAGAAAAAACCTGAGCCTGTAGACGGTCCTCTCTTATCCGAACGCGACAAATTAAAGATCGAAAGGAGAAAAAGGAAAGACGAACGCCAGAGAGAGGCAAAGTTCCAACTGCATTTGGCGGAAATGGAAGCTGTGCGAGCAGGCATGCCTGTTGCGTGTGTGAAGCACGAGGGCGGCGGTGGACACACCGTGAAAGATATTCACATGGATAATTTCACTATCTCTGTTGGTGGCCATGATCTCATTGTTGATGGTTCTGTCACACTCTCTTTTGGAAGACATTATGGGCTTGTTGGTAGAAACGGGACGGGTAAAACAACTTTCCTGAGACACATGGCCATGCATGCCATAGATGGCATTCCCAGGAACTGTCAGATATTACACGTTGAGCAAGAAGTTGTCGGTGATGATACCTCTGCCTTGCAGTGTGTTCTTAATACTGACATTGAGAGAGCTCAGCTTATGGAGGAAGAAGCTCAATTACTCGCCAAACAGAGGGAATCTGAGGACAGTACCGAAAAGGGCAATGATGCAAATGGAGTGGTAAAAGGAGATGCTATTTCACAAAGGCTTGAGCAAATATACAAGAGGCTGGAGTTAATTGATGCTGATGCTGCAGAGTCACGAGCAGCATCCATACTTGCGGGTCTGAGTTTCTCTCCTGAGATGCAGAAGAAGCCAACAAAAGCATTTTCTGGAGGGTGGAGGATGCGAATAGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATATGTTGCTTCTTGATGAGCCTACGAACCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCGTACTTGGTTAAATGGCCGAAAACATTTATTGTTGTTTCTCACGCTAGAGAATTTTTAAACACGGTGGTCACTGATATAATTCACTTACAAAACCAAAAGTTGACTACTTATAGAGGGAATTATGATACTTTTGAGAGGACTCGGGAAGAACAAATTAAAAACCAACAAAAAGCATTAGAGGCACATGAACGTTCAAGAGCTCATATGCAGACCTTCATTGACAAGTTCCGCTATAATGCCAAAAGAGCATCACTTGTTCAGTCTAGAATCAAGGCTCTGGATCGACTGGGCCATGTAGATGCAATTATTAATGATCCTGACTACAAGTTTGAGTTCCCCACTCCAGATGATAGACCGGGTGCACCAATAATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGAGGACCCCTTCTATTTAAGAATTTGAACTTTGGGATTGATCTCGACAGCCGTGTTGCAATGGTTGGTCCAAATGGCATAGGAAAATCTACTATACTTAAGTTAATTGCTGGAGAACTACAGCCAAGTTCTGGGACTGTCTTCCGTTCTGCCAAGGTTCGTATAGCAGTGTTCAGCCAGCACCATGTTGATGGACTTGACTTATCCTCAAATCCTCTTCTATATATGATGCGCTGCTATCCTGGAGTTCCAGAACAGAAACTTCGAGCTCACTTAGGTTCTTTTGGTGTAACTGGAAATCTTGCACTTCAACCCATGTATACTTTGTCAGGTGGTCAGAAAAGCAGAGTTGCCTTTGCAAAGATAACATTTAAGAAGCCACACATAATATTGCTTGATGAGCCATCCAATCATCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGTCTTGTGTTGTTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAGCATCTCATATCTGGAAGCGTGGAGGAGCTATGGATTGTATCCGAGGGAAGAGTGGCACCATTCCATGGCACCTTCTCAGAGTATAAGAAGATACTACATTCATCTTAG 2142 0.4547 MTEVARSVVHEVLGDGIVDVDEPIISYIVNVLADEDFDFGLDGEGAFDALGELLVAAGCVHDFPECRSVCSILSEKFGKRGLVKAKPTVRSLATPFRMNEGLDDGEAPKKKPEPVDGPLLSERDKLKIERRKRKDERQREAKFQLHLAEMEAVRAGMPVACVKHEGGGGHTVKDIHMDNFTISVGGHDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPRNCQILHVEQEVVGDDTSALQCVLNTDIERAQLMEEEAQLLAKQRESEDSTEKGNDANGVVKGDAISQRLEQIYKRLELIDADAAESRAASILAGLSFSPEMQKKPTKAFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYRGNYDTFERTREEQIKNQQKALEAHERSRAHMQTFIDKFRYNAKRASLVQSRIKALDRLGHVDAIINDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPLLFKNLNFGIDLDSRVAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFSEYKKILHSS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01853 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 503 712 IPR003439 GO:0005524
Car05g01853 713 Coils Coil 262 282 - -
Car05g01853 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 435 IPR003439 GO:0005524
Car05g01853 713 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 121 712 - -
Car05g01853 713 SMART AAA_5 199 412 IPR003593 -
Car05g01853 713 SMART AAA_5 528 695 IPR003593 -
Car05g01853 713 Pfam ABC transporter 406 487 IPR032781 -
Car05g01853 713 MobiDBLite consensus disorder prediction 95 140 - -
Car05g01853 713 ProSitePatterns ABC transporters family signature. 339 353 IPR017871 GO:0005524
Car05g01853 713 PANTHER NON-TRANSPORTER ABC PROTEIN 121 712 - -
Car05g01853 713 MobiDBLite consensus disorder prediction 102 140 - -
Car05g01853 713 CDD ABCF_EF-3 503 695 - -
Car05g01853 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 437 IPR027417 -
Car05g01853 713 CDD ABCF_EF-3 175 412 - -
Car05g01853 713 Gene3D - 161 448 IPR027417 -
Car05g01853 713 Gene3D - 467 712 IPR027417 -
Car05g01853 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 704 IPR027417 -
Car05g01853 713 Pfam ABC transporter 520 650 IPR003439 GO:0005524
Car05g01853 713 Pfam ABC transporter 194 367 IPR003439 GO:0005524
Car05g01853 713 ProSitePatterns ABC transporters family signature. 622 636 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01853 Car-Chr5 63692571 63701107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01853 465 664 Calmodulin-binding Proteins AT2G36910 26.724 1.24e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01853 K06158 - gmx:547980 1244.57