Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01851 ATGTCAAAGAAAAAGTCAAGTTTAGGTCGTCAAAAAATCCCAATTGAAAAAATACCTAAAAAAAGTCATTTGCAAGTTACATTTTCTAAGCGTCGTTCAGGACTCTTCAAGAAGGCAAGTGAACTTTGCACTCTTTGTGGAGTGGAGATTGCAATTGTGGTTTTCTCTCCGGCTGATAAGGCATTCTCTTTTGGTCATCCAGAAGTTGAGTCTATTGTTGATCGTTATTTGAGTCGAAACCCTCCACAAGATTCTAGTTCTCACCAACTTGTTGAGGCTCATAGAAATGCTAATGTTCGAGATCTCAACATGCAACTAACTCAACTTCTTAGCCATCTAGAGATTGAGAAAAAGCAAGGAGAAGAGATAGATAATGTGAGGAAAGCTAGGCAAAGACAATTTTGGTGGGAAAGCCCTATTGATGAGCTTGGTTTGCAAGAATTGCTCCAATTAAAGGTCTCTATTGAGGACCTAAAGAAGAATATTGGAAAATTTGCTAGCAAATGCATGATAGAACAAACCAACTTCTCTTCACCAAATATTGGAGCTAATGGATTTGGACATTATGATGCCTTTGAGAACAAACCGGGTGTAGGGATTAACATTGCTTCCACATTTCCTAAT 624 0.3814 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIVDRYLSRNPPQDSSSHQLVEAHRNANVRDLNMQLTQLLSHLEIEKKQGEEIDNVRKARQRQFWWESPIDELGLQELLQLKVSIEDLKKNIGKFASKCMIEQTNFSSPNIGANGFGHYDAFENKPGVGINIASTFPN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01851 208 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Car05g01851 208 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Car05g01851 208 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Car05g01851 208 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Car05g01851 208 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Car05g01851 208 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Car05g01851 208 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Car05g01851 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Car05g01851 208 PANTHER MADS BOX PROTEIN 7 177 - -
Car05g01851 208 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Car05g01851 208 Gene3D - 89 178 - -
Car05g01851 208 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01851 Car-Chr5 63669326 63669949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01851 5 168 Type I MADS-box Gene Family AT5G60440 55.090 1.07e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g01851 SRF-TF 3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01851 - - lja:Lj0g3v0067779.1 327.791