Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01828 ATGGATCTAATATTTGAAGTACAAAGAGGGAGAGCATTCTCAATTGAAGTGGGCTTCTTCGACACAATTTTGGAAATCAAAGAAAAAGTTCAAAAATACCAAGGAATTCCAATCTCTAAACAAACCTTACTCTTCAATGGCCAAGTTCTCCAGGACGACGGCGACATTTGGAAATGCGAGATTTTTCAAAATTCTCGCATTCATCTAGTTGTCGCCGTTGCAGAATCTGACCATCACAGATCACCTTTGGTAGAGGAAACCAAAATTCACCTCAACATCAAAACACCTTCATCAAAATCCCACATTCCGGTCGAAATCGACAAAAACCACACCGTTTTAAAGCTTAAAGAGAAAATTCATGACATTGAAAATAATGTCCCAATAAACAAACTCATTTTGCATGTGCATGCAACAGGAACAGAATTGCATGAGAATCAATTATTACGTGATTGTGACGTTTCGGATAACAGTGAAATTGAGGTGAGTTTTAAGCAACCGGCAGCGGCGGCTCCGGCGGTGGTTGGTGGTGGTGGTGGTGGAGGTTCAAAGAAGTTGAAGCTGTTGGTTTTACCCAAGAGTGGAACAAAGAAAATACCCGTGGAAATGAATGCTTCTGATAATGTTGGTGAGTTGAGGAAGGAACTGAATAAGTTGAATCAGAGGCTTCAGTTTCATCTTCCACAAGATGGTTACTTTTTCATTTATAAACAAAATGTTATGGATGATGACAAGTCTTTTCGATGGCACCATGTTTGTCAAGGTGATACCATTGAAATCTTTAATGGAAGTGTCACTGGTGGATCATGA 807 0.3965 MDLIFEVQRGRAFSIEVGFFDTILEIKEKVQKYQGIPISKQTLLFNGQVLQDDGDIWKCEIFQNSRIHLVVAVAESDHHRSPLVEETKIHLNIKTPSSKSHIPVEIDKNHTVLKLKEKIHDIENNVPINKLILHVHATGTELHENQLLRDCDVSDNSEIEVSFKQPAAAAPAVVGGGGGGGSKKLKLLVLPKSGTKKIPVEMNASDNVGELRKELNKLNQRLQFHLPQDGYFFIYKQNVMDDDKSFRWHHVCQGDTIEIFNGSVTGGS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01828 268 Gene3D - 1 70 - -
Car05g01828 268 Gene3D - 73 169 - -
Car05g01828 268 SUPERFAMILY Ubiquitin-like 86 169 IPR029071 -
Car05g01828 268 ProSiteProfiles Ubiquitin domain profile. 89 168 IPR000626 GO:0005515
Car05g01828 268 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 267 - -
Car05g01828 268 SUPERFAMILY Ubiquitin-like 181 260 IPR029071 -
Car05g01828 268 ProSiteProfiles Ubiquitin domain profile. 1 71 IPR000626 GO:0005515
Car05g01828 268 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED 1 267 - -
Car05g01828 268 SUPERFAMILY Ubiquitin-like 1 82 IPR029071 -
Car05g01828 268 SMART ubq_7 1 72 IPR000626 GO:0005515
Car05g01828 268 SMART ubq_7 89 164 IPR000626 GO:0005515
Car05g01828 268 Pfam Ubiquitin family 91 165 IPR000626 GO:0005515
Car05g01828 268 Pfam Ubiquitin family 6 72 IPR000626 GO:0005515
Car05g01828 268 CDD Ubl_ubiquitin_like 91 161 - -
Car05g01828 268 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Car05g01828 268 Coils Coil 201 221 - -
Car05g01828 268 Gene3D - 185 261 - -
Car05g01828 268 ProSiteProfiles Ubiquitin domain profile. 185 266 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01828 Car-Chr5 63454004 63454810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01828 1 73 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.877 6.75e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01828 - - lang:109360845 358.607