Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01827 ATGATTTATCCCGCGAGAATTGAGTGGATGAGAGGAGCGAGATTGATATCATTGTTCTCCGGGCGCTGCCGTATTGAAAAGTCACGGCTACGGACGTTGATGATTGTTAAGTCTCCCACATTTTTTGCTTCAACCATTTTCACAAAGTTACAATTACAGCATCCTCCTTCTCATTTTCAATGCCGATTCTACTCTTCCtcaccttcaccttcaccttcaccttcaccttcCTCTAACAAGCTCTTTGTTGGAGGGCTGTCATGGTCAGTGGACGAGAAGTCTCTCAAAGATGCTTTCTCTTCCTTTGGAGATGTCACTGAAGTCAGGATAGTCTATGATAAAGACACTGGTAGGTCTAGAGGCTTTGGATTTGTCATCTTTTCAAATGAAGAACATGCCAAATCTGCAAAGGATTCAATGGACGGAAAGGCACTGTTAGGTAGACCATTGAGAATAAATTTTGCCCTCGACAAGGTCCGTGGTGGACCTGTTGTAGTTCCTCGATTTTCAGACATCGGAGTTGGACACTTAAACAGGCACTAA 543 0.4088 MIYPARIEWMRGARLISLFSGRCRIEKSRLRTLMIVKSPTFFASTIFTKLQLQHPPSHFQCRFYSSSPSPSPSPSPSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDTGRSRGFGFVIFSNEEHAKSAKDSMDGKALLGRPLRINFALDKVRGGPVVVPRFSDIGVGHLNRH 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01827 180 Gene3D - 60 160 IPR012677 -
Car05g01827 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Car05g01827 180 SUPERFAMILY RNA-binding domain, RBD 53 163 IPR035979 GO:0003676
Car05g01827 180 PANTHER TRANSFORMER-2-RELATED 56 171 - -
Car05g01827 180 SMART rrm1_1 80 153 IPR000504 GO:0003723
Car05g01827 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 151 IPR000504 GO:0003723
Car05g01827 180 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 56 171 - -
Car05g01827 180 CDD RRM_HP0827_like 80 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01827 Car-Chr5 63451977 63453487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01827 77 158 C2H2 Transcription Factor Family AT2G19380 36.585 4.86e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01827 - - cam:101502883 350.903