Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01825 ATGAAGAGGTTCAATAACTCAAACACTATGGCTTCTTTGCTTTCCATATATCCATCCAAAGGGGTGGATGAGAGGAATGAAACAAAAGGTTATAGTGAAGAATTTCAAGCAATGTTAGATAGATTGGAACAAGAAGATAGTTATGAAGATGCTAGTTTAATGTTAGAGAAGAAAAGAAGATTGGGTTTTGATCAAGTGAAAGCTTTAGAAAAGAGCTTTGAGTTGGACAATAAGCTAGAGCCAGAGAGAAAAGTGAAACTAGCTGAAGAATTAGGCTTGCAACCTAGACAAGTTTCGATTTGGTTCCAAAATCGTCGTGCTCGTTTGAAAACTAAACAATTGGAGAGAGATTATGGTGTTCTTAAGTCCAATTTTGATGTTCTTAAGGTTGAGTATAGTAATCTTCAGCAAGAGAATGAAGCTCTTACTACAAAGGTATTGAGAATGCAGAGGAAATTCGTAGAAAAACAATCTATGTAA 480 0.3521 MKRFNNSNTMASLLSIYPSKGVDERNETKGYSEEFQAMLDRLEQEDSYEDASLMLEKKRRLGFDQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARLKTKQLERDYGVLKSNFDVLKVEYSNLQQENEALTTKVLRMQRKFVEKQSM 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01825 159 Coils Coil 125 152 - -
Car05g01825 159 Pfam Homeobox associated leucine zipper 112 151 IPR003106 GO:0006355|GO:0043565
Car05g01825 159 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Car05g01825 159 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Car05g01825 159 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 156 IPR045224 GO:0003700
Car05g01825 159 CDD homeodomain 57 113 IPR001356 GO:0003677
Car05g01825 159 Gene3D - 51 118 - -
Car05g01825 159 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6 5 156 - -
Car05g01825 159 SMART HOX_1 55 116 IPR001356 GO:0003677
Car05g01825 159 Pfam Homeodomain 60 110 IPR001356 GO:0003677
Car05g01825 159 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Car05g01825 159 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Car05g01825 159 SUPERFAMILY Homeodomain-like 57 123 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01825 Car-Chr5 63428152 63429762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01825 16 153 Homeobox Transcription Factor Family AT5G65310 56.376 8.19e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car05g01825 Homeodomain 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01825 K09338 - pop:7486577 195.667