LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g01818	ATGGCTTACAATATTCTGAAATTGTTCTCAATTATTTTTCTGTTCTGCACTATATTTTCACCTGCAGAAACAGCATCAACATACAGCCATTACAATTGCTCCAACATGCAAACATTTAGTCCAAATAGCACATACAAAATCAATCTAAACACACTTTTATCTACACTTTTATCCAAAGCTTCTGACACAACCAGCCATGGCTTCTACAGCACTAGTACATTAATTGATAAAACAGAAACGATCTATGGTCTCTTCATGTGTAATGGATATACAAATCATTGTGGAGAATGTGTTAGGAACTCTACCAAGACACTTACCTCACTGTGTGACTTAAATAAAGAAGCTATCATTTGGTCTGATGAATGTTTGGTTCGTTATTCCAACAGGTCTTTCTTCAATATTATGGAAGAATCTCCATCGTGGTGTGTGCAGGACTCAATGGATCATCAAGGTTCATTGGTAACTTTTTACCAAACTTTAAGGGCTTTGATGAAGCTTCTTCTAAAGGATGCCGAGTATGAAGCTCTAAAGGATAAATATAACAAATTTGTTGTCACGAAAGATACTTATGATGAGGATCATAAATTCTTGTTTGGAATTGCTCAGTGTACACCAAACCTCTCCAAGAACGATTGCATAAAATGTTTAAGGGATGCTATGAATTATCTTCAAACATCATGTGCTAGTGGGAAGATTGGAGGAAGTGTTTTATATCCAAGTTGTATTGTCAGATATGATCCTAATCCATTTTTTCCATTAACTAGAGGAAAAAGAAAGAAAAAGGGAGGTCTATCATTTTTCACGTTTTATTATGCAGTTATTCCTGTCATGATTTTCTCTATTATGGTTTTCTGTTTCACGAGTTATCAGCTACGTAGGAGAGAAAGGAAGAATCTCAAGTACCAAAAAGAAAATTTTGGGGAAGAGATTTCTACAGAAATAAACTCTCTACAATTTGATTTCGATGTGATTCGGCTAGCAACAAACAAGTTCTCTGATGATAACAAGATAGGGGAAGGTGGTTTTGGAGATGTTTACAAGGGAATGTTTCCAAATGGAGATGAAatagcagtgaagaggctcataagacattccagtcaaggagctgtggaatttaagaatgaggtgctgttaatagccaagcttcaacacagaaatcttgtgagactgttaggattttgcttgaaaaggaatgagaagatacttatttatgaatatatgcacaacaaaagccttgatTACTACCTATTTAGCCCTGAAAACCCTAGAAAATTAAATTGGCATCAACGTTACAAGATTATAAGAGGGATTGCTCGAGGCATTCTTTATCTTCACGAGGATTCTCATCTAAAAATCATACATTGTGATCTTAAACCAAGTAACATTTTGTTAGATGACAAAATGAATGCAAAAATCTCAGATTTTGGGTTGGCAAGGATTGTTGCCATTGATCAAATGCAAGGAAATACTAGTATAATTGGTGGGACATATGGTTACATGTCTCCCGAATATGCAATGCTCGGCCAATTTTCTGTGAAATCTGATGTATTTAGCTTTGGAGTCATAATTCTTGAGATTATCAATGGAAAAAGAAATGTTGATTATAATGGGGAAGATTCCATTGATGACCTCGTGAGCCATGGTTGGAAGAAATGGAGGGATAATAAGCAATTGGAATTATTGGATCCTCCATTGGCATACTCATGTTCAGAAACAGAAGTCAATAGGTGCATCCAAATTGGTCTACTATGTGTGCAAGAAAATCCAGATCAAAGGCCTACTATGGCAACAATTGCTTTGTATTTCAACTGTTATTCAATAGATCTACCATTACCTCAACAGCCAGCATTTTACATGCGTGGAAAAATTGAATCAAGGATGGCAAGTAAAAAAATAATGTCAGGCCGACCTAGGAGTTATTCGGTGACAAGGTTTTAA	1938	0.3251	MAYNILKLFSIIFLFCTIFSPAETASTYSHYNCSNMQTFSPNSTYKINLNTLLSTLLSKASDTTSHGFYSTSTLIDKTETIYGLFMCNGYTNHCGECVRNSTKTLTSLCDLNKEAIIWSDECLVRYSNRSFFNIMEESPSWCVQDSMDHQGSLVTFYQTLRALMKLLLKDAEYEALKDKYNKFVVTKDTYDEDHKFLFGIAQCTPNLSKNDCIKCLRDAMNYLQTSCASGKIGGSVLYPSCIVRYDPNPFFPLTRGKRKKKGGLSFFTFYYAVIPVMIFSIMVFCFTSYQLRRRERKNLKYQKENFGEEISTEINSLQFDFDVIRLATNKFSDDNKIGEGGFGDVYKGMFPNGDEIAVKRLIRHSSQGAVEFKNEVLLIAKLQHRNLVRLLGFCLKRNEKILIYEYMHNKSLDYYLFSPENPRKLNWHQRYKIIRGIARGILYLHEDSHLKIIHCDLKPSNILLDDKMNAKISDFGLARIVAIDQMQGNTSIIGGTYGYMSPEYAMLGQFSVKSDVFSFGVIILEIINGKRNVDYNGEDSIDDLVSHGWKKWRDNKQLELLDPPLAYSCSETEVNRCIQIGLLCVQENPDQRPTMATIALYFNCYSIDLPLPQQPAFYMRGKIESRMASKKIMSGRPRSYSVTRF	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g01818	645	ProSiteProfiles	Gnk2-homologous domain profile.	27	131	IPR002902	-
	Car05g01818	645	Gene3D	Phosphorylase Kinase; domain 1	291	406	-	-
	Car05g01818	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	452	464	IPR008271	GO:0004672\|GO:0006468
	Car05g01818	645	ProSitePatterns	Protein kinases ATP-binding region signature.	337	359	IPR017441	GO:0005524
	Car05g01818	645	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	273	625	-	-
	Car05g01818	645	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	20	258	-	-
	Car05g01818	645	ProSiteProfiles	Gnk2-homologous domain profile.	137	250	IPR002902	-
	Car05g01818	645	Gene3D	Transferase(Phosphotransferase) domain 1	407	606	-	-
	Car05g01818	645	SUPERFAMILY	Protein kinase-like (PK-like)	315	620	IPR011009	-
	Car05g01818	645	Gene3D	-	142	250	IPR038408	-
	Car05g01818	645	Gene3D	-	25	131	IPR038408	-
	Car05g01818	645	SMART	serkin_6	331	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car05g01818	645	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	20	258	-	-
	Car05g01818	645	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	273	625	-	-
	Car05g01818	645	CDD	STKc_IRAK	337	599	-	-
	Car05g01818	645	Pfam	Protein tyrosine and serine/threonine kinase	334	599	IPR001245	GO:0004672\|GO:0006468
	Car05g01818	645	Pfam	Salt stress response/antifungal	33	128	IPR002902	-
	Car05g01818	645	Pfam	Salt stress response/antifungal	154	246	IPR002902	-
	Car05g01818	645	ProSiteProfiles	Protein kinase domain profile.	331	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g01818	Car-Chr5	63348498	63351909	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g01818	6	626	Receptor kinase-like Gene Family	AT4G05200	42.768	7.24e-171	502

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Car05g01818		PK_Tyr_Ser-Thr	1.5e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g01818	-		-	mtr:MTR_3g079850	969.148