Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01813 ATGGCTATGCAACAAATGATGGGTGCTTCTTCTTCGGCGATGCCTTTGAAGAAATTCgacgtatttattagctttcgaggtgaggatactcgtaggaacttcacaagccatctttatgatgctgtgagcaataaagttataacctttaaagacgacaatgagcttgaaaaaggagatgagatctcatcggcattgatcaaagccattgaggagtcatatgcatccatagtcatcttctcaaaagagtatgcttcctcaaaatggggcttgaatgaactcatcaagattctagaatgcaaaaaagatcagggacagattgtgataccgattttctacgaaatagacccatcacatgtgaggaatcaaactgggagttacaggaaagcttttgcaaagcataagaaagatttgaagcacagcaaagataagttgaagaaatggaaagatgctctcacagaagcagccaatttagctgggtggcactctcaaaatTACAGGATTGAATCGAACTTCATTAAAGACATCGTGGAAGATGTTTTAAAAAAACTGAATCATAGACACCCATTTGAAGTTAATAAGGAACTTCTTGGAATTGAAGAAAAGTATGAAGAGACTAAATCCTTGCTGAAAATTGGGTCAAATGATGTTAGAACCCTTGCATtatggggcatgggtggcataggaaagaccactctagctaaagatttatatgctaaattgtgttctcaatttgaacgtcattgcttcctcgaaaatgtaagggaagaatcatccaggtatggactcaatgttgtacgtaacaaacttttttcgacattgttggagcttcgtcttgatgcaacttatgtagaaactccaattttcatgagaagacttgcatgtgaaaaaagcttcattgtgttggatgatgtggcaaccttagagcaagcagaaaatcttaacataaacaataattgcttgggaccaggtagtagagtcattgtcacaactagagataagcaggtatgcagtgaatttgatgaatgtgaaatttatgaggtcaaggaattggacgaatatgaatctcttcagttattctgtttgaatgcttttggagaaaaacgtcctaaagttggatatgaaaagctctcagaaagtgcaattggctattgcagaggcaatccactggcattaaaagttttaggtacaaatttccgtacaaaaagcaaacaagcgtgggaaagtgaattggaaaagctaaaaaagattcccaataggagaattcacgatgtattaaaattgagttttgatgacttagatcatacacaacaggacatatttctagacattgcatgtttcttctccatgatgcatcagtggtacgaggatcgtgatacttgtcgagatgacctaatatgtctactagatgcttgcaatttctttgcagcaagtgggattgaagtccttataaataaagcactcataacgtgtaaagattttaattgcatagacatacataatttgttacaagaaatgggacaagagattgttaagcaagaatctcccaaaaaccccggaagaagaagtcgattgtacgatcctgaggaaatttatgatttactgaaatataacaagGGTACTGAAGTTGTTGAAGCTATGGTATTTGATAGTTATAAAGTTGAGAATCTACACTTGAGCTCTGATTCCTTTAAAGGAATGACTAACTTAAGATATCTTCAAATAAGAAATACATGTTTTGAGAGAAAAAGTTCcaatgtgtacctccctgacggtcttgggtggttgtctgataaattgaggtacctttcttgggatgtattcccacttgagtctttgccatcaaccttttgctttgaaaggcttgtacaacttatcatgtgcaaaagcaagcttaaaaagctttgggatggaattcagaaacttgacaatttaaagttcattatgctaaatgactccaaagacctggttgaggtcccagacttatctggtgcaccaaatattgaagtagtatctttgtcttattgtgagagcttgTGTCAGCTCCATCCATCCATTCTCAATGCCCCCAAGCTTGGAGAATTACATTTAAATGGTTGCATAAACCTTGAAAGCTTGAAAACAACCACTCACTCAAAATCTCTTTATAAAATCGATCTCACTGGTTGTTCATCTCTCATTGAATTTTCGGTGACATCAGACGAAATGGTTTGGCTGTCCTTAAGTGGAACTGCTATACATGAATTGGCATCATCAATTTGGCATAATAGCAAACTGACTCATCTCTTTCTAAGAAAATGTCAGAAACTTAACATTGTTGGGAAGAAGTTATCAAATGATCCAGGAGTGATGCCTCTTAAAAAACTGGATCTTTCAGGATGCACACAAATCGATACATTGAATTTATGGCACATCCTTGATGGCTTACAATATTTAAAACATCTACATTTGAAAGAGTGCTGCAACATAGAAGCTCTCCCTGACAACATCCAAGAAAAATCAATGATGGAAAATCTTATTTTAGATGAATGCAAGAAACTTAAGTCCCTACCAAAGCTTCCCGCATCCTTGCAAAAATTGACAGCCATTAACTCTACTTATCTGAACACAGACTCCATTCAACAGACAATGCTTGAGAACATGTTACACAAACTCCACACAAAATCCATTCAAGACAGATCAAATGATTTTTATGAAATATCTTTCATTCCCGGAGGTCAAGTTCCAAGAGAGTTTGATTTTCATACAACAGAAACTTCCATAGTTATTCCTCCTATTCCAAAATTTGGTTTGTCTGCTTTCATTTTTTGTATCATTCTCTCCGAGGGCTTAAATGTGTCTTACAATGGCGTTTATTGTACTATATACGAACGCGGAAAACAAGTCCAGAAATGTTATGTAGGTGGGAGAGTGACATTAATTTCAGATCATGTTATGTTAAGTTGCCAGTATGTTAATGACGAATTGGTGGAGTTGGGGAGTGAAAGTGGAGATGATCATTACAACCTTTCATTTGAATTCAAATATTATGTTGATGAGGACGACGGAGAATTTTGGTCAACTAAGGGGATAAAGGGTTGTGGGATCTTTCCTGTATATGACCTGAAGCTTAGGTTGGAGTTGGATGGTAGAATCATTGGTAGAGATGAAATTGTTGAATTACAATCTAGTGCTCAAGTTTTTTATGAGTTTGATCAACATCTAAAACTTGATATTGAAGAGTTACAATACCGAGAAGTTGGAGTCGAAATTAGAGGCTCTAATGATGAAAATGACCAACAACAAAGAAAATGA 3291 0.1765 MAMQQMMGASSSAMPLKKFDVFISFRGEDTRRNFTSHLYDAVSNKVITFKDDNELEKGDEISSALIKAIEESYASIVIFSKEYASSKWGLNELIKILECKKDQGQIVIPIFYEIDPSHVRNQTGSYRKAFAKHKKDLKHSKDKLKKWKDALTEAANLAGWHSQNYRIESNFIKDIVEDVLKKLNHRHPFEVNKELLGIEEKYEETKSLLKIGSNDVRTLALWGMGGIGKTTLAKDLYAKLCSQFERHCFLENVREESSRYGLNVVRNKLFSTLLELRLDATYVETPIFMRRLACEKSFIVLDDVATLEQAENLNINNNCLGPGSRVIVTTRDKQVCSEFDECEIYEVKELDEYESLQLFCLNAFGEKRPKVGYEKLSESAIGYCRGNPLALKVLGTNFRTKSKQAWESELEKLKKIPNRRIHDVLKLSFDDLDHTQQDIFLDIACFFSMMHQWYEDRDTCRDDLICLLDACNFFAASGIEVLINKALITCKDFNCIDIHNLLQEMGQEIVKQESPKNPGRRSRLYDPEEIYDLLKYNKGTEVVEAMVFDSYKVENLHLSSDSFKGMTNLRYLQIRNTCFERKSSNVYLPDGLGWLSDKLRYLSWDVFPLESLPSTFCFERLVQLIMCKSKLKKLWDGIQKLDNLKFIMLNDSKDLVEVPDLSGAPNIEVVSLSYCESLCQLHPSILNAPKLGELHLNGCINLESLKTTTHSKSLYKIDLTGCSSLIEFSVTSDEMVWLSLSGTAIHELASSIWHNSKLTHLFLRKCQKLNIVGKKLSNDPGVMPLKKLDLSGCTQIDTLNLWHILDGLQYLKHLHLKECCNIEALPDNIQEKSMMENLILDECKKLKSLPKLPASLQKLTAINSTYLNTDSIQQTMLENMLHKLHTKSIQDRSNDFYEISFIPGGQVPREFDFHTTETSIVIPPIPKFGLSAFIFCIILSEGLNVSYNGVYCTIYERGKQVQKCYVGGRVTLISDHVMLSCQYVNDELVELGSESGDDHYNLSFEFKYYVDEDDGEFWSTKGIKGCGIFPVYDLKLRLELDGRIIGRDEIVELQSSAQVFYEFDQHLKLDIEELQYREVGVEIRGSNDENDQQQRK 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01813 1096 Pfam NB-ARC domain 206 415 IPR002182 GO:0043531
Car05g01813 1096 Pfam Leucine Rich Repeat 621 639 IPR011713 -
Car05g01813 1096 SUPERFAMILY "Winged helix" DNA-binding domain 420 535 IPR036390 -
Car05g01813 1096 Gene3D - 349 433 IPR042197 -
Car05g01813 1096 SUPERFAMILY L domain-like 557 882 - -
Car05g01813 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 443 IPR027417 -
Car05g01813 1096 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 1081 IPR044974 GO:0006952
Car05g01813 1096 Gene3D Ribonuclease Inhibitor 528 733 IPR032675 -
Car05g01813 1096 Gene3D Ribonuclease Inhibitor 734 879 IPR032675 -
Car05g01813 1096 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Car05g01813 1096 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 1081 - -
Car05g01813 1096 Gene3D - 185 345 IPR027417 -
Car05g01813 1096 Gene3D - 16 184 IPR035897 -
Car05g01813 1096 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 160 IPR035897 -
Car05g01813 1096 SMART till_3 18 157 IPR000157 GO:0007165
Car05g01813 1096 PRINTS Disease resistance protein signature 218 233 - -
Car05g01813 1096 PRINTS Disease resistance protein signature 291 305 - -
Car05g01813 1096 PRINTS Disease resistance protein signature 384 398 - -
Car05g01813 1096 PRINTS Disease resistance protein signature 709 725 - -
Car05g01813 1096 Pfam TIR domain 18 189 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01813 Car-Chr5 63293503 63299034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01813 17 863 WRKY Transcription Factor Family AT4G12020 31.178 1.74e-93 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01813 - - mtr:MTR_2g037140 1189.48