Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01789 ATGTCGAGCCGAGGCGGAAGAGGTGGAAGAGATCGGTCTAGGAGGGATTATCCTTCAAGATATGAAGACAGTAAGGGGAATGGTGGTATGGGGCGTGGTGGCGGTGGTAGCAGCAGCGACAATGGCAATCCTCCTTCCAGACACCTTTGGGTTGGGAATCTATCCCACAACCTTGTAGAGGATGAACTTGCTCATCATTTCATACGTTTTGGCCCGTTGGAAAAGGTTGCATTCCAACCCGGCCGAAGCTATGCTTTCATCAACTTTGAAGTGGACGAAGATGCCATCGATGCCATGAGATCACTGCAAGGTTTTCCTCTTGCTGGCAACCCGCTTAGAATCGAGTTTGCAAAGGCGGATAAGCCATCGACAGTAACACGTGATGAAGATTATTCACGTGATGAACGAAGATCAGCATTGCGGGGATCTCCTTTCCCCCAAAGGGATAGAGGACGTCATGGTAGCCCTGAACCGCATTATTCTGACAAATCCAAGTTGAGTGAGAAAAATCCAGAGCCCAGTGAGGTTTTGTGGATTGGGTTCCCAGCTCAGTTGAAGGTGGATGAATTAATTTTGGGAAGGGCTTTTTCTCCATTTGGTGAGATTGAGAAGATTTCGACATTTCCAGGTCGTAGTTATGCGTTTGTTCGCTTTAGAAGTGTGACTTCAGCTTGCAGAGCGCTAGATAATCTGAAGGGAAATTTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAATCAGGTCCATCAAACACTGGAAAGAGCTCATTTAATGGCCCTCGATCCCCATCATACAAGTCAAGTGGACATGGTGGATCTTTCGAGAACTTCAGGCAGGATAGGAGCTTTGGTGGGGAGCAGAACATTAGGTCTCCAAATCTGTTCCCGAATTGGGATACTCAAGATTCTGATGCTTATGACATTAACAGAAGGGGTTCTTCACGGGCTGGTGGAATTAACACATATGAGCAGAGGAAATTTGGAGAGAAGGGGACTCCACTTGGAGCATCACAAGAACTCTATGAGCATATAAATAGTCCACCAAGAGAAAGGCATGTTCATCAGGGTGATTTTCCACGGAATTATCCTCAAAGGGGTCCATTCTTTGAAGATCCACAGCGCTTTCCAGAAGATGCTCCGTATCTACATGCGGCCAAAAAGCTAAAGATGGGCTCTTCTCCTCCTGAGGTAGAGCTTCCAGAGTATGCTTTCTCTGAGTTAGAAAGACAAAAACATGTTTTCCCAAGATTACCTGATTTTCCTCACCATGAACCTTTTGATAAAAGCTTTGATGCTGGAAATTTCACTTTTGGTCAAACATTTAATCAGCCACCAAGTTCACCTCCGATTCGATTAGATAGACACGAAGGCTGGAAACCTTATGATAGTTTCCAAATGGGTCCTGGTGCTCTCCAATCAAATTTTGTTGAGAAAAAAAGACTTACACCTGAACCTGATAATTCATCTTCAACTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGGACTCCTATTTGTCGTGCCCGCTGCTTCCCTCTCTTCTTTATACTTCATATCTATGCAACCCTACCAGAATTCTTAGATTGCACTGCAAGAACTAGTCTAGACATGCTTTCAAAGCACTACTACCAAGCAGTTGGCGTTTGGGTTGTTTTCTTTGTTCCGGGAAGTGATGCTGACATGGAATTCTACAACGAGTTTATGCATTATCTGGAGGAAAAGCAGCGTGCTGCAGTTTCCAAGCTGGATGACAAGACCACCTTATTTCTTGTACCTCCATCAGTTTTCTCAGAGAAAGTGTTAAAGGTACCTGGTAAATTGAGCATATCTGGTGTTATTCTAAGGTTGGAATATCCTGGTTTAAACCAGGGTCCTATGCACATTGAAAGAGAAATGAAAAATGAAAGCCTATCATCTTCCTATAATGAGAATACGTTGTATCCAAATTCATCATTTCCATCACTACGCATACCTACAAACACTCAACCATCTAGTTCCGAATTGGGTAATTCCGGAATTAGCAATCTTTCATTTCTGGGAAACAAATTTGCAGCAGCTCCATTCGTATCGGATTCAGCTCGTTCTATGGCCAGCATGCCTGAGTCCTACGATGAAAGAAGTCGTGACTATCCTTCCATCCAGCCGCAAACATCTGGACCAAACTGGCCTTCTCACAATCAGCAAAACTTTATGCCTAATAGAACTTTACCTTCGCATCTATTGAGTGGTGCTGTTGAACCTATCATTGAGGAGCGTCAGCCCATGTTTAATGTGATCTCAAATCAACATTCCAGCGGAATTTCTGGTATTCCATTGAGTGGAAATAGCATGTCATCATATTCAGAAATAAGAAATTTTGATCCTTCAACCCCTGTGGGAGCCCTGCAACCAGAACAGCTTGCACAGCTAGCTGCATCTCTTCTTGAGCAGCAGAGGCAATCGGGAAGCTCTTTGAGCACATCGACAATGGGTGATCCCAGGCAGAACAGATTTAATGAGTCTGAAACATCATCCAGACCATCGTATGCTGTAGAAAACAACGCAGTGGCGAATTCTGAATTCTCAACAACTCAGTTTAGTCACGTTCTACAGTTGCAAAAGCAGCTACAGCAGATGCCAAATGTGCCTCAGATGTCACAGATGAGTCAAATAGAACAACAAAGAGAGGTTAATGGAAATCAGCAGCTGGCAGATAATAGCTTGCAGGAAGATGGAGAAGCAGATCCACAGAAACGTTTACAAGCAACACTACAGCTGGCTGCTGCTCTTCTTCAGCAAATCCAGCAAGGAAAAGGGAATTGA 2814 0.441 MSSRGGRGGRDRSRRDYPSRYEDSKGNGGMGRGGGGSSSDNGNPPSRHLWVGNLSHNLVEDELAHHFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQGFPLAGNPLRIEFAKADKPSTVTRDEDYSRDERRSALRGSPFPQRDRGRHGSPEPHYSDKSKLSEKNPEPSEVLWIGFPAQLKVDELILGRAFSPFGEIEKISTFPGRSYAFVRFRSVTSACRALDNLKGNLFGNPRVHICFAKSESGPSNTGKSSFNGPRSPSYKSSGHGGSFENFRQDRSFGGEQNIRSPNLFPNWDTQDSDAYDINRRGSSRAGGINTYEQRKFGEKGTPLGASQELYEHINSPPRERHVHQGDFPRNYPQRGPFFEDPQRFPEDAPYLHAAKKLKMGSSPPEVELPEYAFSELERQKHVFPRLPDFPHHEPFDKSFDAGNFTFGQTFNQPPSSPPIRLDRHEGWKPYDSFQMGPGALQSNFVEKKRLTPEPDNSSSTEWKWEGTIAKGGTPICRARCFPLFFILHIYATLPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVPGSDADMEFYNEFMHYLEEKQRAAVSKLDDKTTLFLVPPSVFSEKVLKVPGKLSISGVILRLEYPGLNQGPMHIEREMKNESLSSSYNENTLYPNSSFPSLRIPTNTQPSSSELGNSGISNLSFLGNKFAAAPFVSDSARSMASMPESYDERSRDYPSIQPQTSGPNWPSHNQQNFMPNRTLPSHLLSGAVEPIIEERQPMFNVISNQHSSGISGIPLSGNSMSSYSEIRNFDPSTPVGALQPEQLAQLAASLLEQQRQSGSSLSTSTMGDPRQNRFNESETSSRPSYAVENNAVANSEFSTTQFSHVLQLQKQLQQMPNVPQMSQMSQIEQQREVNGNQQLADNSLQEDGEADPQKRLQATLQLAAALLQQIQQGKGN 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01789 937 SUPERFAMILY RNA-binding domain, RBD 33 128 IPR035979 GO:0003676
Car05g01789 937 MobiDBLite consensus disorder prediction 713 740 - -
Car05g01789 937 MobiDBLite consensus disorder prediction 119 169 - -
Car05g01789 937 MobiDBLite consensus disorder prediction 812 845 - -
Car05g01789 937 SUPERFAMILY RNA-binding domain, RBD 187 275 IPR035979 GO:0003676
Car05g01789 937 MobiDBLite consensus disorder prediction 877 916 - -
Car05g01789 937 MobiDBLite consensus disorder prediction 1 48 - -
Car05g01789 937 MobiDBLite consensus disorder prediction 247 335 - -
Car05g01789 937 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 927 - -
Car05g01789 937 CDD RRM3_Spen 49 118 - -
Car05g01789 937 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 240 IPR000504 GO:0003723
Car05g01789 937 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 112 IPR000504 GO:0003723
Car05g01789 937 Pfam SPOC domain 491 607 IPR012921 -
Car05g01789 937 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 119 IPR000504 GO:0003723
Car05g01789 937 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 248 IPR000504 GO:0003723
Car05g01789 937 SMART rrm1_1 176 244 IPR000504 GO:0003723
Car05g01789 937 SMART rrm1_1 48 115 IPR000504 GO:0003723
Car05g01789 937 PANTHER RNA-BINDING PROTEIN SPENITO 15 927 - -
Car05g01789 937 MobiDBLite consensus disorder prediction 120 169 - -
Car05g01789 937 Gene3D - 160 261 IPR012677 -
Car05g01789 937 Gene3D - 36 126 IPR012677 -
Car05g01789 937 MobiDBLite consensus disorder prediction 877 905 - -
Car05g01789 937 MobiDBLite consensus disorder prediction 1 22 - -
Car05g01789 937 MobiDBLite consensus disorder prediction 248 306 - -
Car05g01789 937 MobiDBLite consensus disorder prediction 34 48 - -
Car05g01789 937 MobiDBLite consensus disorder prediction 703 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01789 Car-Chr5 63024892 63034572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01789 40 273 Eukaryotic Initiation Factors Gene Family AT1G22760 26.423 1.27e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01789 - - gmx:100811668 1220.68