Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01786 ATGGCGCATAGATTGCTGAGGGACCACGAAGCCGACGGTTGGGAACGCTCTGACTTCCCAATCATCTGCGAATCATGCCTTGGTGACAGTCCCTATGTTCGAATGACACGGGCTGAGTATGACAAAGAGTGCAAGATTTGTACAAGGCCATTTACTGTTTTTAGATGGAGACCCGGTCGAGATGCAAGATATAAGAAATCTGAGATCTGTCAGACATGTAGTAAGTTGAAAAATGTTTGTCAAGTATGCCTTCTGGATCTTGAATATGGGCTTCCAGTTCAAGTGCGTGACACAGCTCTCAGTATCAGTTCCAATGATGCCATTCCCAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAACACGACCGCAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTTTGGTAAAGCACGACCAAATGATACTATCTTGAAGCTTCAGAGGACAACACCTTATTACAAAAGAAATCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTACCGACATGAGATGCCAGTAACTGGGGAACTGTCGCAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCGGTGGCTATGAAACTACTTGGCAAGGCAGGAGAGATGGCCTCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACACTTTATGTTGGTGGACTTGATGCTAGGGTCACCGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAGTCCATCAAAATGGTTCTCCAACGAGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCAAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAATCATCAAAACCCGAGTCTGATGGCTCTGATCAAGCAAGGCAGCAGGCCTCTGTGGCTCATAGTGGGTTGTTGCCTCGAGCAGTTATATCACAACAGCAGAACCAGGATCAAACCCAAGGAATGCTTTACTATAACAATCCACCTCCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGAAAGAAGCTATTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCTCAAGATGGTCCTCCTGGTGGGCCTTCTGGTTCAGGGGAGAACAAACCGAGTTCTGAGAAGCAGCAAATGCCACATTATTCCCATCCAATGATGCCACCTCCACATGGCCAATATCATCATCAATACTATCCTCCATACGGTTACATGCCACCAGTTCCCCCTTATCAACAGTACCCACCACCACCATACAGTGCCGCAATGCCTCAATCCCAGCCACCACCTGCAAACCATTCCTATCAATATCCTATGCAACCAGGGTCTTCACAAACAGGGTCTGGACAGGTTGGGTCTGCTCCGGCAGAAACCGGAACATCAACATCAGGGTCACAGCAGCAATGA 1563 0.4351 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMASLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQERSYYPSMDPQRMGALIPSQDGPPGGPSGSGENKPSSEKQQMPHYSHPMMPPPHGQYHHQYYPPYGYMPPVPPYQQYPPPPYSAAMPQSQPPPANHSYQYPMQPGSSQTGSGQVGSAPAETGTSTSGSQQQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01786 520 Gene3D - 212 310 IPR012677 -
Car05g01786 520 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Car05g01786 520 Coils Coil 389 391 - -
Car05g01786 520 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 350 IPR039171 GO:0003723
Car05g01786 520 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 388 490 IPR039171 GO:0003723
Car05g01786 520 Gene3D - 149 210 - -
Car05g01786 520 MobiDBLite consensus disorder prediction 328 346 - -
Car05g01786 520 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Car05g01786 520 SUPERFAMILY RNA-binding domain, RBD 222 310 IPR035979 GO:0003676
Car05g01786 520 SMART rrm1_1 229 297 IPR000504 GO:0003723
Car05g01786 520 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 388 490 - -
Car05g01786 520 MobiDBLite consensus disorder prediction 299 520 - -
Car05g01786 520 MobiDBLite consensus disorder prediction 478 520 - -
Car05g01786 520 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 350 - -
Car05g01786 520 CDD RRM_RBM22 227 300 - -
Car05g01786 520 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Car05g01786 520 MobiDBLite consensus disorder prediction 454 477 - -
Car05g01786 520 MobiDBLite consensus disorder prediction 304 320 - -
Car05g01786 520 Pfam Torus domain 151 194 IPR032297 -
Car05g01786 520 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Car05g01786 520 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01786 Car-Chr5 63002600 63005723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01786 220 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.667 8.95e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01786 K12872 - gmx:100779917 763.066