Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01761 ATGGGTGGCAATGGTAAGCATAGGTGGAAAATTTCCTTCCATCGTTCTTCTACTCACTCTAAGCAAATACAGCCTCCCAAGGAATTTCTATGTCCCATTTCCGGGTCATTAATGTCCGACCCGGTTGTCACATCTTCGGGTCAAACCTTTGAACGCATCTCCGTCCAAGTCTGTGCCGACTTAAAATTCACCCCCATCCTAGAAGACGGGACTCGACCCGATTTCTCCACAATCATCCCCAATTTAGCAATCAAAACAACGATTCTCAATTGGTGCGACAAATCCCGTATCCAACACCCGCACACACCGGATTATGCCTCCATTGAGAACATCGTTAAGGAAGCAAAAGCAGCCTCTGCGGGGAATCAGGAACCAATCAAGGTTTCTGAAAAGGAGCTGTTAAACGCGGTGGTGGATAACTCGCCGGTGATTTTCTCACACGCCGCCACTGAATTAGGGCCACGTGTCAACCACTTCGATTCAGGATCGTCCTCTGAGGAATCAGTAATCATCGGAGAGAGTCCAGGAACAcctttacctttcacgcttcgtcctacgtgtttctctccctcttcctcttcgtcgttcGAGATCGAAGTTCAAAACCCTAACGTCCCTGTTTCGGAAGAAGAAGAATCGTTACTGAAGAAGCTGAAGAGCAACGATATTTTCGAGCAAGAGCAAGGAGTGCTTTCTCTTAGAAGCATCACGAGGAATAGAGAAGACGCTAGGGTTTCGCTCTCCACGCAACGGATTCTCTCGGCGCTTCGATCGCTAATCACTTCACGTTACGTTGTTGTTCAGGTCAACGCAGTAGCTTCGTTGGTCAACATTTCGCTTGAGAAAACGAACAAAGTGAGGATTGTTAGGTTAGGGTTTGTTCCGTTTCTCATTGATGTGTTGAAGGGGGGATTAGGTGAATCGCAGGAACACGCTGCTGGCGCGCTCTTTAGTTTAGCTTTGGACGATGATAACAAGATGGCAATTGGTGTTCTCGGCGCGTTGCAGCCGCTTATGCACGCGCTGAGGTCTGAATCTGAGCGAACTCGTCATGACTCGGCGCTTGCACTCTATCATTTAACTTTGGTTCAGAGTAACCGAGTCAAGCTTGTGAAACTTGGGATGGTACCCACGCTTATTTCGATGGTGAAAACGGCGACAATGGCGAGTAGGGTTTTGCTGATTCTGTGCAATTTGGCAATGTCTGTGGAGGGAAGGACGGCGATGCTGGACGCTAATGCGGTGGAGTGTCTGGTGAGTTTGTTGAAAGAGAATGAGTTGGACTCCGAGGCGACTCGGGAGAATTGTGTTGCAGCGTTGTATGCTTTGAGTCATGGGAGCTTGAGGTTTAAAGGGTTGGCGAAGGAAGCGAAAGCTGTGGAGGTTTTGAGGGTGATTGAGGAGACGGGGACGGAGAGAGCCAGGGAGAAGGCTAAAAGGATATTGCAGACGATGAGGGGTTTTGGAGATGGTGACGATGAAGAAGGTTCCGAGTTTGACAGTGGGTTAACTCGAACTCGTTACAGAGTTGCTGGAGCAAGGAACACCAACCTCATCAACACAACTACATTTTAG 1575 0.4686 MGGNGKHRWKISFHRSSTHSKQIQPPKEFLCPISGSLMSDPVVTSSGQTFERISVQVCADLKFTPILEDGTRPDFSTIIPNLAIKTTILNWCDKSRIQHPHTPDYASIENIVKEAKAASAGNQEPIKVSEKELLNAVVDNSPVIFSHAATELGPRVNHFDSGSSSEESVIIGESPGTPLPFTLRPTCFSPSSSSSFEIEVQNPNVPVSEEEESLLKKLKSNDIFEQEQGVLSLRSITRNREDARVSLSTQRILSALRSLITSRYVVVQVNAVASLVNISLEKTNKVRIVRLGFVPFLIDVLKGGLGESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGMVPTLISMVKTATMASRVLLILCNLAMSVEGRTAMLDANAVECLVSLLKENELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTERAREKAKRILQTMRGFGDGDDEEGSEFDSGLTRTRYRVAGARNTNLINTTTF 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01761 524 Pfam U-box domain 26 95 IPR003613 GO:0004842|GO:0016567
Car05g01761 524 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Car05g01761 524 CDD RING-Ubox 30 77 - -
Car05g01761 524 Gene3D - 207 484 IPR011989 -
Car05g01761 524 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 514 - -
Car05g01761 524 SUPERFAMILY ARM repeat 212 485 IPR016024 -
Car05g01761 524 PANTHER U BOX DOMAIN-CONTAINING 1 514 - -
Car05g01761 524 Pfam Armadillo/beta-catenin-like repeat 322 361 IPR000225 GO:0005515
Car05g01761 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 120 IPR013083 -
Car05g01761 524 SMART arm_5 240 280 IPR000225 GO:0005515
Car05g01761 524 SMART arm_5 322 362 IPR000225 GO:0005515
Car05g01761 524 SMART arm_5 281 321 IPR000225 GO:0005515
Car05g01761 524 SMART arm_5 402 445 IPR000225 GO:0005515
Car05g01761 524 SUPERFAMILY RING/U-box 11 101 - -
Car05g01761 524 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01761 Car-Chr5 62715241 62716815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01761 1 524 U-box Gene Family AT5G65200 55.674 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01761 - - gmx:100815075 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01761 05 62715241 62716815 Car05g01761 05 62715241 62716815 ECH