Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01758 ATGGCATTCTTGTTGAACAAATCAACCCTTGCTTCCCATTTTCGATCTACCTCTCAGCAGAAGACTGAAGATTTGGTTTCTTTCTCGCGCCGTGGATTCCATGTTGAACCCGGGACTCGTGAAAAAGCTCTCTTGGCAGAAGATTCAGCTCTCAAGCCATTCAAATCATATAAGCAGAGTGTGAAAAAGCTCAGAAAATTTGGGGATGTTTTAACTATTGTTGTTGTTGCAGGATGCTGTTACGAGATATATGTCAAGGCAGCTATAAGAGAAGAAGCTCGCAAACAGCGCAAGGATATTTTTCCAGTTTCTATAAATCATTTCTTTAATGCTTGGGAGACTAGATTTCCATTTAGGCTGACTGTTCTTGACGAGAATGGTGGGGATGGGGAAAAAATAGTGATGCTAGTTGTTACACACACTTTATCTAAGCAGAGCAGAGAGACAAACACTCCTGAAAAGAAGTGTAAGGCATGTGAGAAGATAGTGTACTTGGTGGATCAACTTACTGCTGACAACAAGGTCTATCACAAATCTTGCTTCAGATGTCACCATTGCAAGGGTACTCTCAAGTTAAGCAACTTTAGTTCCTTTGAAGGCGTTTTATACTGCAAACCCCATTTTGATCAACTCTTTAAGAAGACTGGCAGCTTGGACAAAAGTTTTGAAGGAATTCCAAGAACTAGTAGAGTTGAAAGATCTACTAACCAGGTCCAAAGCAATAGCCAGTTTTCAAATTTGTTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAGAACAGTGTATCCAATTGAAAAGGTAGGTGTTTATGGAATTTCTTATCATAAGGGTTGTTTCAGGTGTAACCATGGAGGATGTGTAATTAGTCCATCAAACTATGTGGCACATGAACATCGTCTTTATTGTAGACACCACCATACTCAATTGTTCAAGCAGAAAGGTAAATTCAGTCAACTTGACAAGCCAGACAATGTAGAAGAAGGGGTGACTGAGAACACAACAACTGAGTAA 1014 0.3994 MAFLLNKSTLASHFRSTSQQKTEDLVSFSRRGFHVEPGTREKALLAEDSALKPFKSYKQSVKKLRKFGDVLTIVVVAGCCYEIYVKAAIREEARKQRKDIFPVSINHFFNAWETRFPFRLTVLDENGGDGEKIVMLVVTHTLSKQSRETNTPEKKCKACEKIVYLVDQLTADNKVYHKSCFRCHHCKGTLKLSNFSSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRTSRVERSTNQVQSNSQFSNLFAGTQEKCVACKRTVYPIEKVGVYGISYHKGCFRCNHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGKFSQLDKPDNVEEGVTENTTTE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01758 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 181 - -
Car05g01758 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 281 319 - -
Car05g01758 337 CDD LIM1_SF3 155 214 - -
Car05g01758 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 247 280 - -
Car05g01758 337 ProSitePatterns LIM zinc-binding domain signature. 156 190 IPR001781 -
Car05g01758 337 CDD LIM2_SF3 255 315 - -
Car05g01758 337 ProSiteProfiles LIM domain profile. 253 313 IPR001781 -
Car05g01758 337 PANTHER OS06G0237300 PROTEIN 153 333 IPR045268 GO:0051015
Car05g01758 337 ProSiteProfiles LIM domain profile. 154 214 IPR001781 -
Car05g01758 337 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 153 333 - -
Car05g01758 337 SMART lim_4 254 306 IPR001781 -
Car05g01758 337 SMART lim_4 155 207 IPR001781 -
Car05g01758 337 Gene3D Cysteine Rich Protein 249 319 - -
Car05g01758 337 Gene3D Cysteine Rich Protein 151 220 - -
Car05g01758 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 222 - -
Car05g01758 337 Pfam LIM domain 255 310 IPR001781 -
Car05g01758 337 Pfam LIM domain 156 210 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01758 Car-Chr5 62699634 62705972 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Car05g01758 LIM 8.8e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01758 K09377 - gmx:100500501 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01758 05 62699634 62705972 Car05g01758 05 62699634 62705972 ECH