Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01749 ATGACTTCTAATAAGATCAATCAAACTCCAACCCGACGGCGTCCCTTAACCTTCCCGGCAGTCCACCCCTGCAAATCCATATCTCCGGCAACCCTCCTCAGTTCATTAATCACTCTCTCACAAAACATATGCACTTTCCAACCAAACTCCTTCCCCACACAAAAACGAAACGCCAAAGAAACTAAGCGCCAAATCACAATTCTCCTCATATTCTTCCAAGAACTCCATCACCGTCGTTCTTTCATCCCAAAACAAATCATTCCCATTTTCTCGGAACTCCACTTCACCCTCCAACATATCCACTTCTTAATACAAGACTGTTCCCTCCAAAACGCACGCCTCTGGATTCTCTTCAAATCACAATTCGTCGCCACACAGTTTCACCTTCTCGTCCGTTCCGTATCCAAATCTCTCCACTCGTTACCCCTCCACGTCCTCGATATATGCGACGAGGTTAAAGAACTAATTGAATTACTAACCAAACAAGCCGCAAAAGTGAAATTGGAACTCGACGAAAACGACGAACGCGAAGCCAAACGAGTCACTTTAATTTTGAATCAATTAGAAAAAGGAACCGAACCAGACGTTAATTCCATGAAGCAAGTACTCGATTACCTTGAAATCAAAACTTGGATCGATTGCAACGAAGATATCAAATTCCTCCAAAACGTAGAGAAAGAGGTTCCTCTGTTGAAAGGTTTAATAGGTTTTTTGTGCTATTGTCGTGTGATCATATTCGAATCCCTAGATTTTCAATCGCTTAACCGTAATAATAGATCAGAAACCGGGTGCAGCATAGGGATGTTAAACTGCGTAACACCGAATGATTACCGTTGTCCAATTTCACTCGAACTCATGACAGATCCTGTAACCGTTTCCACTGGCCAAACATACAACAGAGCTTCAATTCTAAAATGGTTAAAAGACGGAAACATGACGTGTCCAATAACAGGGGAAAGACTCATTTCAACGGAGCTTTTTCCAAATACAGCACTCAAAAAACTTATCCAAAAATTCTGTTACGATAACGGAATTTCAACAACCAAGTCCCACGTCAGCATAACAACGGCAACCACCGTGAATACTGATTCTCCCGCTGCAGCACACGCGATACAGTTCGCGTCGTGGTCACTCGCTCGAATGTTAGTTTTCGGAACAGAGGAACAGAAAAACAAAGCAGCTTACGAAATTCGTTTACTCTCTAAATCAAACGTGTTCAACACGGCGTGTTTGGCTGAAATGGGAACAGTGCCACCGTTACTCGATCTTATTCAAACTACAACTACGCAAGAGAACGCAATCGCTGCTCTTTTGAAGCTTTCAAAGCATATCATTGGCCGCGAAGCTATCATGGAGAGTAGAGGTTTAGAATCTCTTGTTACGGTTCTCAAAAGAGGTTATAGTTTAGAAGCTCGCAGAGACGCAGCTGGTATAATATTTTATCTCACTTCGGTGAAAGAGTACAGAAAATTAATAGGAGAAAATTCAGAAGCAGTCCATGGTTTAGTTGAAATAATAAAAGAAGGAACAATTTGTGGAAAAAAGAACGCCATTGTTGCTATTTTCGGTTTGCTTTTGCTTCCTAAGAATCGTTCTAAGGTGCTTGTTTCTGGTGCTGTTCCTGCTATTGTTAACGTTTTGTCTTCTTCAGATAGAGCTTATGTTGTTAATGATTGTTTAGCGGTTTTGGTAGTTTTGGCGGATAGTGGTGAAGGTGCTTTGGCTATATTAGAAGGTTTGGATTTGTGTTTGGTTGTTGGGGTTTTGAAATCTGCAACTTCACGTGAAGAGAAGGAGTACTGTGTTTCTATTTTGTTGTCGCTGTGTGTTAATATTGGTGCACAGGTTGTTGGTGTTTTGGTGAAGGATGCTTCGCTTATGCCATTGCTTTATGCAATTATTACGGATGGTACTCCTCAAGCGGAAAAGAAAGCACGTAAGCTTATTAATGTCTTGCAAGAATTCCTTGAGAAGAGGACTTTGGGAATGGTGGGATCCTCTGTTTCGCACTAA 2013 0.4158 MTSNKINQTPTRRRPLTFPAVHPCKSISPATLLSSLITLSQNICTFQPNSFPTQKRNAKETKRQITILLIFFQELHHRRSFIPKQIIPIFSELHFTLQHIHFLIQDCSLQNARLWILFKSQFVATQFHLLVRSVSKSLHSLPLHVLDICDEVKELIELLTKQAAKVKLELDENDEREAKRVTLILNQLEKGTEPDVNSMKQVLDYLEIKTWIDCNEDIKFLQNVEKEVPLLKGLIGFLCYCRVIIFESLDFQSLNRNNRSETGCSIGMLNCVTPNDYRCPISLELMTDPVTVSTGQTYNRASILKWLKDGNMTCPITGERLISTELFPNTALKKLIQKFCYDNGISTTKSHVSITTATTVNTDSPAAAHAIQFASWSLARMLVFGTEEQKNKAAYEIRLLSKSNVFNTACLAEMGTVPPLLDLIQTTTTQENAIAALLKLSKHIIGREAIMESRGLESLVTVLKRGYSLEARRDAAGIIFYLTSVKEYRKLIGENSEAVHGLVEIIKEGTICGKKNAIVAIFGLLLLPKNRSKVLVSGAVPAIVNVLSSSDRAYVVNDCLAVLVVLADSGEGALAILEGLDLCLVVGVLKSATSREEKEYCVSILLSLCVNIGAQVVGVLVKDASLMPLLYAIITDGTPQAEKKARKLINVLQEFLEKRTLGMVGSSVSH 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01749 670 Coils Coil 149 176 - -
Car05g01749 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 455 IPR000225 GO:0005515
Car05g01749 670 SUPERFAMILY RING/U-box 272 346 - -
Car05g01749 670 SUPERFAMILY ARM repeat 378 652 IPR016024 -
Car05g01749 670 PANTHER U BOX DOMAIN-CONTAINING 10 661 - -
Car05g01749 670 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Car05g01749 670 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Car05g01749 670 PANTHER OS07G0532750 PROTEIN 10 661 - -
Car05g01749 670 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Car05g01749 670 Gene3D - 366 662 IPR011989 -
Car05g01749 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 347 IPR013083 -
Car05g01749 670 CDD RING-Ubox_PUB 277 319 IPR045210 -
Car05g01749 670 SMART arm_5 443 484 IPR000225 GO:0005515
Car05g01749 670 SMART arm_5 527 568 IPR000225 GO:0005515
Car05g01749 670 SMART arm_5 404 442 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01749 Car-Chr5 62602986 62605221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01749 8 660 U-box Gene Family AT1G60190 38.201 1.05e-144 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01749 - - gmx:100810963 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01749 05 62602986 62605221 Car05g01749 05 62602986 62605221 ECH