Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01747 ATGGTGATGGAGATTGTCATTTCTTTGATAATCTTATTTGTTGGAATTGCTATTTTGGTGTCTATCCATTTCTGCATAGTTGGAAGGGCTTTTAGAAGTGATAATAATAGTGGAGACATTATTCAAGACCAAAGTGGTACTAGAAGAACATCAACAAAAGGAACGTTTGGGGACAATATTGGTGACTTGAACAACCTTCCATGTTTTGATTATGTGGAACCAGAGAAAGGAGGCAACCTTGTGGATTGTGCTGTTTGTTTGGAGAGCTTTAAGGTTGGTGATGCTTGTCGGTTGTTGTCTAATTGCAGACACAGTTTTCATGTTCAGTGCATAGATTTGTGGATTCTCAAGACACCCTTTTGTCCAATTTGTAGAACATGGGTTCATTCACGAGTAACTGTGAGGGAAGAAAGTGCTGTTTCTGATTCTGATATTGTAGAAATTGAAATGCCATGA 456 0.3816 MVMEIVISLIILFVGIAILVSIHFCIVGRAFRSDNNSGDIIQDQSGTRRTSTKGTFGDNIGDLNNLPCFDYVEPEKGGNLVDCAVCLESFKVGDACRLLSNCRHSFHVQCIDLWILKTPFCPICRTWVHSRVTVREESAVSDSDIVEIEMP 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01747 151 SMART ring_2 83 124 IPR001841 -
Car05g01747 151 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 148 - -
Car05g01747 151 Pfam Ring finger domain 82 125 IPR001841 -
Car05g01747 151 SUPERFAMILY RING/U-box 68 131 - -
Car05g01747 151 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Car05g01747 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 148 - -
Car05g01747 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 134 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01747 Car-Chr5 62577743 62578510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01747 46 146 Rapid Response to Elicitors AT3G16720 33.663 1.41e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01747 - - gmx:102662620 190.66