Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01740 ATGAAGAATTTGCATTGGTATAAACAAATTTCTAACAATGGAAAGTGTGGGAGGAGGCTTTCACTTGGGGAGTATAAAAGAGCAGTTTCTTGGTCAAAGTATTTGGTATCTCCTGGTGCTGCTATAAAGGGAGAAGGAGAAGAAGAATGGAGTGCAGATATGTCTCAGTTGTTTATTGGATCCAAATTTGCTTCTGGAAGACATAGCAGAATCTATAGAGGTGTTTATAAGCAAAGGGATGTTGCTATTAAGCTTGTTAGTCAACCTGAAGAAGATGAAGACTTGGCTGCTTTTCTTGAGAAGCAATTTACTTCTGAGGTTGCTTGCCTTCTTCGATTGCGCCATCCAAATATCATTACTTTCATTGCTGCATGCAAGAAACCACCAGTGTTCTGCATAATCACAGAATATTTAGCCGGTGGTTCACTGAGAAAATACCTGCATCAACAAGAACCACATTCAGTACCACATGAACTTGTTCTGAAACTATCCCTAGATATAGCAAGAGGAATGGAATATCTTCATTCTCAAGGGATACTTCATAGGGATCTCAAATCAGAGAATCTCCTTTTAGGAGAAGACATGTGTGTAAAAGTAGCTGATTTTGGTATCTCATGCTTAGAATCTCAGTGCGGAAGCGCGAAAGGATTCACTGGAACTTACCGTTGGATGGCTCCTGAAATGATAAAAGAAAAACATCATACTAAAAAAGTTGATGTGTATAGTTTTGGTATTGTTCTTTGGGAGCTTTTAACTGGATTGACTCCATTTGACAACATGACACCAGAGCAGGCTGCATTTGCAGTTTCCTACAAGAATGCAAGACCGCCACTGCCATCTGAATGTCCATGTGCATTTAGTAATCTAATCAATAGATGTTGGTCAAGCAATCCAAAGAAAAGGCCACATTTTGTTGAGATTGTCACAATTTTGGAGCACTATACCGAATCAATTGAACAAGATCCAGAGTTTTTCTCAACTTACAAACCATGTCCTACAAATAAAATTATGGGATGCTTCCCTAAATGTAAGGCTCGCCAAAAATCTTTTTGA 1053 0.3875 MKNLHWYKQISNNGKCGRRLSLGEYKRAVSWSKYLVSPGAAIKGEGEEEWSADMSQLFIGSKFASGRHSRIYRGVYKQRDVAIKLVSQPEEDEDLAAFLEKQFTSEVACLLRLRHPNIITFIAACKKPPVFCIITEYLAGGSLRKYLHQQEPHSVPHELVLKLSLDIARGMEYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTGLTPFDNMTPEQAAFAVSYKNARPPLPSECPCAFSNLINRCWSSNPKKRPHFVEIVTILEHYTESIEQDPEFFSTYKPCPTNKIMGCFPKCKARQKSF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01740 350 CDD STKc_MAP3K-like 64 311 - -
Car05g01740 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Car05g01740 350 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Car05g01740 350 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Car05g01740 350 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Car05g01740 350 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Car05g01740 350 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Car05g01740 350 Gene3D Transferase(Phosphotransferase) domain 1 139 335 - -
Car05g01740 350 Gene3D Phosphorylase Kinase; domain 1 47 138 - -
Car05g01740 350 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Car05g01740 350 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Car05g01740 350 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01740 350 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Car05g01740 350 Pfam Protein tyrosine and serine/threonine kinase 60 311 IPR001245 GO:0004672|GO:0006468
Car05g01740 350 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01740 Car-Chr5 62492322 62497334 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01740 30 320 MAP Kinase Kinase Kinase AT1G62400 66.102 4.56e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Car05g01740 PK_Tyr_Ser-Thr 9.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01740 - - gmx:100807757 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01740 05 62492322 62497334 Car05g01740 05 62492322 62497334 ECH
Car05g01740 05 62492322 62497334 Car07g01051 07 9318104 9320867 PCT