Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01728 ATGTCAATGGATCTTGAGACAAAACTTACACAAATCTATGCTTCAAAGTCACAACATTCACAAGAAAATTACTACACCAAACCCAACATGAAAAATCATGAGAATACTTTTGGTGGGTTTCCTAATTCATCTCAAGGATTCATGCAAGATTTTAATCACATTAATAAGTTTAATGTGAATGGGTCATTTTTCAATCCTGTTTCCGGGGTCCAAACAACAAATTTTGATCCTTGTGATAATTTTACCTATGATTTCAAGCCTAATTTGTTGGAGAATAATGGTAGTGGTAATGCTTATGCTATGGACAATTTTTTATATGGAGGCTATGGTTTGAACATTTTTCAGAGAAATAATAATAAAGTGGAAATGTTGGTTACAAACCAACAAAATTATTTTCCCTTTAATATTAATTCTCAAAAAACCAAGCCTTTGAATTTTGTTGTACCTGATAAAATCTCATGCATATCACCAATGAATTATTACAAAAGAATTGGCATGAACAGAAACAATGCTAGAAAGACAGAAAAAGTTCAGAAGTCCAACATAGTCAAAGGGCAATGGACAGTACAAGAAGATAGGTTGTTGATTCAGCTGGTTGAAAAATATGGATTGAGAAAGTGGTCTCATATTGCTCAGTTATTCCCAGATAGAATAGGAAAACAGTGCAGAGAGAGATGGCATAATCATCTAAGGCCTGACATTAAGAAGGACATATGGAGTGAGGAAGAGGACAAAATATTGATAAAAGCTCATTCAGAGATAGGAAACAAATGGGCAGAGATAGCTAAAATATTAGCTGGAAGAACTGAAAACTCAATCAAAAACCATTGGAATGCAACCAAAAGAAGACAATATTCCAAAAGAAAGTGTCGTTCAAAGTACCCTAGAGGAACTCTTCTACAAGAATATATCAAAAGCTTGAACCTTGACAAAAACCCTCCAAAAGATTATAGAAGAAAATCTACCACTAATGCTACTTTGTTCAAAAACAAAACCAGTCAAATCACTCTGTCTCAAACACCTCATCAACAATTTTGTCTCAATCAGTGTTTGGTACCAAGTTCTGATTTTGATGATGTACCAGATTTTGAGAGTTTGTTTCAAGATGGGTGTAGTATTGATTCTCTGCTAGAGGATATAAAATCTGGATCAAGTGTTAATCTTGTTGATGAGACAGATATTATGGGATCAATTATGTTTGGAGTTGAAGTTAAGAAGGAGATGGTGTCACTGCTCAATTAA 1242 0.3382 MSMDLETKLTQIYASKSQHSQENYYTKPNMKNHENTFGGFPNSSQGFMQDFNHINKFNVNGSFFNPVSGVQTTNFDPCDNFTYDFKPNLLENNGSGNAYAMDNFLYGGYGLNIFQRNNNKVEMLVTNQQNYFPFNINSQKTKPLNFVVPDKISCISPMNYYKRIGMNRNNARKTEKVQKSNIVKGQWTVQEDRLLIQLVEKYGLRKWSHIAQLFPDRIGKQCRERWHNHLRPDIKKDIWSEEEDKILIKAHSEIGNKWAEIAKILAGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPKDYRRKSTTNATLFKNKTSQITLSQTPHQQFCLNQCLVPSSDFDDVPDFESLFQDGCSIDSLLEDIKSGSSVNLVDETDIMGSIMFGVEVKKEMVSLLN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01728 413 Gene3D - 238 295 - -
Car05g01728 413 PANTHER BNAC07G50190D PROTEIN 102 310 - -
Car05g01728 413 Gene3D - 183 236 - -
Car05g01728 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 234 IPR017930 -
Car05g01728 413 CDD SANT 187 230 IPR001005 -
Car05g01728 413 ProSiteProfiles Myb-like domain profile. 231 281 IPR001005 -
Car05g01728 413 PANTHER MYB PROTEIN-RELATED 102 310 - -
Car05g01728 413 SMART sant 183 232 IPR001005 -
Car05g01728 413 SMART sant 235 283 IPR001005 -
Car05g01728 413 Pfam Myb-like DNA-binding domain 187 241 - -
Car05g01728 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 285 IPR017930 -
Car05g01728 413 ProSiteProfiles Myb-like domain profile. 179 230 IPR001005 -
Car05g01728 413 SUPERFAMILY Homeodomain-like 181 277 IPR009057 -
Car05g01728 413 CDD SANT 239 281 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01728 Car-Chr5 62277580 62279315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01728 66 380 MYB Transcription Factor Family AT4G18770 47.863 1.60e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g01728 Myb_DNA-bind_6 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01728 K09422 - gmx:100781456 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01728 05 62277580 62279315 Car05g01728 05 62277580 62279315 ECH
Car05g01728 05 62277580 62279315 Car07g01060 07 9407323 9409062 PCT