Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01712 atgggtatgaatatcaacatgaagataaagggagaaatagaaaaggtaaatggaaaggaaCTAAGTTACAGTGAATTTGTTGAAAGATATATGGACAAGAACAAGCCAGTGGTGCTTACTGGACTAATGGATCATCATTGGAGGGCTTCCACTGATTGGGTTACCCCTAATGCCCAACCCAATCTTCAATTTTTCTCCAATCATTTTGGTGCCTCTAAAGTTCAGGTTGCAGATTGTGATACTAGAGATTTCACTGATCAAAAAAGGGAGGAGATGTTGGTCTCCGATTTCGTAGAGCGGTGCCTTCTAATTGAGGGTTCTGCAGTTCGGTGTGATGATCAATTTGGTGCTAGTAATGGTCACAATTTATATCTACCATATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCAGAATATGTAGCATACACCACTCCAATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTTGACAACTTCAGAATGAATGCTTACTCTGACAGTTACCAGCAAAATAAGGAAATATGTTGCTCTGACTATCGTTTTGTTTACATGGGAGTTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCATACAGCTGGTCGGCGAATGTCTGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAGTGTCATCTTGTGTTTGACAGGAATGTGAAAAGCTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATATCCTGGTTTTCAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCATTTAACCTTTCTTGGGTGTGGAATTTACTTTTAAAGGACTACAATGAGGCCAAGGAATACATAGAAGACATTAGGGATATATGTGATGATTTTGAAGGTCTCTGTCAGCGCAATCTTGCTGCTAACACAGGTGGGAAAAACATATTTCATGATACACGAGCAATCCAGTTTGTCCTCTGA 1056 0.3703 MGMNINMKIKGEIEKVNGKELSYSEFVERYMDKNKPVVLTGLMDHHWRASTDWVTPNAQPNLQFFSNHFGASKVQVADCDTRDFTDQKREEMLVSDFVERCLLIEGSAVRCDDQFGASNGHNLYLPYLKDWHFVKEYPEYVAYTTPMFFCDDWLNLYLDNFRMNAYSDSYQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLVFDRNVKSCVYNIFDEVSDSKYPGFQKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAFNLSWVWNLLLKDYNEAKEYIEDIRDICDDFEGLCQRNLAANTGGKNIFHDTRAIQFVL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01712 351 Pfam Cupin-like domain 25 292 IPR041667 -
Car05g01712 351 Gene3D Cupin 3 290 - -
Car05g01712 351 ProSiteProfiles JmjC domain profile. 151 306 IPR003347 -
Car05g01712 351 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 10 338 - -
Car05g01712 351 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 338 - -
Car05g01712 351 SUPERFAMILY Clavaminate synthase-like 8 318 - -
Car05g01712 351 SMART cupin_9 126 306 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01712 Car-Chr5 62034930 62039920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01712 11 298 Glycosyltransferase AT1G78280 25.168 1.20e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car05g01712 Cupin_8 5.8e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01712 - - lja:Lj1g3v0342020.1 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01712 05 62034930 62039920 Car05g01712 05 62034930 62039920 ECH