Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01706 ATGAGTTGGGGAGGGAATGAGAATGGGAGACATCCCCACATTCCTGATAATATTATTAGATGCAAGCTAAGGTTATTTTGTCTTGTGAGGGGACAAAGAACAGCTTCCAAAGGACTTCACACAAGGATAAATAAAAAAGGTGAAAAAAGAATGGCATCATCAAGCTCTTACAATTCACCTTGTGCTGCTTGCAAATTCCTGAGGAGGAAATGCATGCCAGGTTGCATATTTGCACCGTACTTTCCACCAGAAGAGCCTCAAAAATTTGCAAACGTTCACAAGATATTTGGTGCAAGCAATGTGACTAAGATCCTCAACGAACTCCTCCCTCAGCAGAGAGAAGATGCTGTTAATTCTCTTGCTTATGAAGCCGAAGCTCGTGTTCGAGACCCCGTTTATGGTTGTGTTGGTGCTATCTCTTTCCTTCAGAGACAAGTTCAAAGGCTTCAAAAAGAACTTGATTCTGCTAATGCTGATCTTCTTCGTTTTGCTTACAATGATATCTCTCCTTCTCCTCTCCCTCCTCTTCCTCTTGTTGTTCCAAATTCATTTCATCAACAATTAATTCCTCAAAGAGGCTTTACTACTGCTAGATCATTTGGTAATGATGGAAATGCTTTTTACTCTTTTCCTTATTCTATTCCATGGAATGATACTTCTGAGGATATAAAtggaggtgtaggtggtggcggcggtggtagtgctggtggagttggaggtggagttggaggaggaggtAATTTGTGA 747 0.3614 MSWGGNENGRHPHIPDNIIRCKLRLFCLVRGQRTASKGLHTRINKKGEKRMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRFAYNDISPSPLPPLPLVVPNSFHQQLIPQRGFTTARSFGNDGNAFYSFPYSIPWNDTSEDINGGVGGGGGGSAGGVGGGVGGGGNL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01706 248 Pfam Lateral organ boundaries (LOB) domain 60 157 IPR004883 -
Car05g01706 248 PANTHER ELONGATED PETIOLULE 1 51 230 - -
Car05g01706 248 ProSiteProfiles LOB domain profile. 59 160 IPR004883 -
Car05g01706 248 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 51 230 - -
Car05g01706 248 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01706 Car-Chr5 61970436 61972765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01706 51 163 AS2 family AT5G63090 91.228 7.39e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car05g01706 LOB 5.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01706 - - cam:101513806 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01706 05 61970436 61972765 Car05g01706 05 61970436 61972765 ECH
Car07g01083 07 9654167 9655731 Car05g01706 05 61970436 61972765 PCT