Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01703 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACCATCTTTGGTGTTGGATCTTGGAGTTCTGTTCCCAAACTAGCTGGGTTGCAAAGATGTGGAAAGAGTTGTAGATTGAGATGGATAAATTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCACAACAAGAACAGAATCTTATTATTAGTCTTCATCAACTACTTGGAAATAGATGGGCTCAAATTGCAGCACGATTACCCGGGAGAACTGATAATGAAATAAAAAACTTTTGGAATTCATGTTTGAAGAAAAAGCTTATGAAGCAAGGGATTGATCCAGCTACACACAAGCCCTTTCTCAATTATGAATCTCTTATAAAGGAAGAGAAAGAAAAATCATCAATGCTAATGCCACTGTCTCAATCTCAAAGGTTTTTAGCTACACCAACAATGCATGAATCCTCACTAATGAGTGATTTGAATCACTATAATAATATTGTTGACTTAGCAGCTTTAACAGAAGCATCAAGAAAATTCCTCATGAATAAACCAGCAGCATTGGATTTGGATCCATTATGCTACTTTGAATTTCAAATGGATGTTGCTCCTTTTGATTATAATTTAAGTTTGAGAAATTATCAACCAACAAGCCTTGAACAGAACCAATTTGGAAGCAATTCAAACTATTTCTTTACTTCAATGCCTTGTGTAGATAGTTCAGAGTTTTCAGACAACAACAATAACTCAGCTTTTTTGGTGAATGAAAGTTCAAGCAACAGCTCAAGTATGAGTGTTTATCAAGGAGCAAATGAAGCTGGTTTTTCATGGAAAAGTGAGAACAAGTATTTGGATCCTTTGTTGCAGTTTCAAGTGAATGCAGTAAAATCAGAAGAGTTTAACAAAACAAGTTCATGGCAAGAAGGACTGTTGCTGACTCATAATAATTCAATAGATTTCAATGCCTGTCCTTTAAGGTCACTGTCAGAAGATCATAGTACTGAAGCTAATTTTGATGTGTTTCAGCATTTATGA 1062 0.3522 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITIFGVGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEQNLIISLHQLLGNRWAQIAARLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPFLNYESLIKEEKEKSSMLMPLSQSQRFLATPTMHESSLMSDLNHYNNIVDLAALTEASRKFLMNKPAALDLDPLCYFEFQMDVAPFDYNLSLRNYQPTSLEQNQFGSNSNYFFTSMPCVDSSEFSDNNNNSAFLVNESSSNSSSMSVYQGANEAGFSWKSENKYLDPLLQFQVNAVKSEEFNKTSSWQEGLLLTHNNSIDFNACPLRSLSEDHSTEANFDVFQHL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01703 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car05g01703 353 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Car05g01703 353 SMART sant 13 63 IPR001005 -
Car05g01703 353 SMART sant 66 114 IPR001005 -
Car05g01703 353 CDD SANT 70 109 IPR001005 -
Car05g01703 353 CDD SANT 17 61 IPR001005 -
Car05g01703 353 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Car05g01703 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car05g01703 353 Gene3D - 11 67 - -
Car05g01703 353 PANTHER MYB TRANSCRIPTION FACTOR 1 348 - -
Car05g01703 353 PANTHER MYB DOMAIN PROTEIN 55 1 348 - -
Car05g01703 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car05g01703 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car05g01703 353 Gene3D - 69 144 - -
Car05g01703 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01703 Car-Chr5 61930546 61931956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01703 1 133 MYB Transcription Factor Family AT1G57560 81.955 1.55e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g01703 Myb_DNA-binding 4.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01703 K09422 - gmx:100811140 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01703 05 61930546 61931956 Car05g01703 05 61930546 61931956 ECH
Car07g01086 07 9684751 9686585 Car05g01703 05 61930546 61931956 PCT