Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01700 ATGGAAGTGATTAACCAGAATAAGGAGGATAATCCGATGGCAGAAGAGGGCAATGACAATGCCATTGATCACAACGAAGACACATGCTATGGTGTGGAAGATGAGCGAGAAGAACAAAATTCATCAGagaatgaaggagaagaagaagaagaagaagaaaaagaagaagaagcagaagaagaagaTACAGAGTGTGAGAATCCGTTCGAGTTCGAAAACGGGATTAATCCTTTGGACTTAATAGGTAACAGTGATTCCGGTCTTCCGTGCTACCAGACAATTAAAGATTACGTGGTTCTCTGTAACAAAAAGCGAAAACCACTCGAACAATGTCACCGTGAAGGAACTTCTTCTAAGAAGGCAAGAGAAGAAGATATTGCCGAGGTAAGCTCAGCTGAGATGACGGAAATTGAATTAATGAATTTTGATCAGTGCGGGAGATCAAAAAAGAAGGTGCCTAGAAAAAGAGGTAGGCGAAAAGGATCAAAGAAGAAACTTGACGAAAGGCTGTCACGAATGTTGGGCGATGCCAACCTTCACTATGCAAATCGTCGTTATGACATGGCTATAACTGTGTTGCATGAAGTTGTCAGGCTGAAGCCAACTTTACCCGAGTCATATCACATCCTTGGACTTGTCCATAATGCAATCGGGGATTATAAAAAAGGAATGAGTTTTTACAAGATTGCTGCTCGTTTGACTCCAAAGGATTCATCGCTTTGGAAAATGCTCTTTGCATGGTACATAGAACAAGGTGATATTGGTGAAGCCAGTTGTTGTCTTTCAGAAGCAATAAAAGCAGACCCTAAAGATAGTACTCTAAGAAGTTATCGAGCAATGCTTTATGCTGAACTTCAAGATTTTCAAAAAGCTGCTGTGGCTTATGAACAAGTATATCAACTTTGTTGTGAAAACGTTGATGCACTAAAAGAAGCAGCTAAGTTCTATCAAAAGTGTGGCCAAGTTGAACGCTCAGTTTGCATTCTTGAAGACTATCTGAAGAATCAGCCAGATGGAGTAAATGCAAGTGTAGTTGATCTACTTGGTGCCATATTGATGGAAATCAATGCGCATGACAAAGCTCTTCAGTATATTGAACTATCTCAAGTGGACGGAAAAGAATTGCCCTTAACTTTGAAAGTTAAAGCTGGAATCTGTCATGTTCATCTTGGAAACATGGAGAAGGCTCAGGTTTTCTTTAATGATTTGAAACCAGAGAATGCAAACAAGCATGTTGAGTTGATCACTGAGGTTGCAGACTCATTAATGGGTCTTGGACATTATAATTCGGCTTTGAATTATTTTCCGATGTTGAAAGGAAATAGTAAAAATGAAAATGGTCTTCTGTATTTGAAAATTGCTAGATGTTATCAATTCTTGGGAGAAAGGTTACAAGCTATTCTCTCTTTTTCCAAAGGCAAGGTTTTATTTTTATTAAGAACAGAATTTAGGCAAATTATACTAAATGAGAAAACACTACAAGATGATGTGGAAGCACGCATAGCTTTGGCTTCCCTTCTTGTTGAGGAAGGGAAAGAAAATGATGCCATTTCCTTGCTGTCTCCTCCAAAAGATTCTGACCCTGGTGAAGCACATTCTGAAAAGTCAAATAGATGGTGGGTTGATGTGAGGATAAAACTTAAGCTCTGCAACATATTTCATAGTAGAGGGATGTTTAATGATTTTGTGGGTGTAAGTTTCCCATTGGTTCATGAATCGCTGCACGTTGTAACTCCTAGACAGAAGGTAATATTTGAGAAGCTAAATTTAAGCATACATTCTTTCTTTCATACAAGCACATTCACACACAAAATGTTGTGTATGGGATGTTTCCAGAAACCAAATACAGACTCTCCCTTGTGTAATCTTCACAAAGATGAAGAATATCACCAGCTAATCATTGATTTGTGCAATGCGTTAGCATCCTTGCAAAGGTATAGGGAAGCATTAGAGATTATTAATCTCACTCTAAGGTCGGCTCATACTTCTCTGTCTGCTGAGAATAATGAGAAGCTTCGTTCTCTTGGAACTCAAATGGCATACAACACTACAAATCCTAGACATGGTTTTCATTGTGTAAAATGCATTGTTCAACAACATCCACAGAATGTTGCAGCTTGGAATTGCTACTACAAGGTCATATCGAGATTGGAAAACCGAGATACAAGACACGACAAATTTGTACGTGCTATGCAAGGAAAATTTGTGGATTGCGTGCCTCCTATCCTCATTTCTGCACATCAGTTTACTTTATGTAGCCATCATCAAGACGCAGCAAGGAAATACCTTGAAGCTTATAAACTTTTGCCGGAGAATCCCTTGGTTAATCTCTGTGTTGGAACAGCCTTGATCAACTTGGCGTTGGGTTTCAGACTTCAAAATAAGCATCAGTGTGTTGGACAAGGTTTAGCATTCCTCTGTAATAATTTGAGGATTTGTCAGAACAGCCAGGTTTGTTTTTATGAATTTCCATTCAGTGGGAGAGATGATGCAGTCTGGACTTGGCATGGGGCAACAGCCGCCAAGCAGTACCAGCAGCCCCCGCTGCAACAGCCGTACATCATGATGCAACCTCAACTTCAGGCGCAATCGCCTGTGTGGTCTCAATCCGCCCAGCCTCCTCAGCAGCCCGCCAGCGCCGATAAGGTACGTACTCTCTGGATCGACAATTTGCAGTATTGGATGGATGAGAATTATCTCTACACCTGCTTCGGTCAAAACGGCGAGGTAATATCTCTAAAAGTGGTTAGGAATAAGCAAACTAGTCAATCAGAAGGTTATGGTTTTATCGAGTTTAATTCTCATGCAACTGCTGAGAGAGTGCTTCAAACATATAATGGAGCCATTATGCCGAATGGTGGCCAGAGCTACAGATTGAATTGGGCAACATTCAGTGCTGGGGAGAGGTCATCTCAGCAGGATGATGGTCCTGATCATACCATTTTTGTTGGTGATTTGGCTGTTGATGTTACTGATTACCTTCTTCAGGAGACTTTTAGGGCTCGTTATAACTCGGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTTACTGGTCGGTCTAAGGGTTATGGTTTTGTTAGATTTGCTGATGAGAGTGAACAAATGAGGGCTTTGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGGCCTATGAGGATTGGACCAACCACTAATAAAAATCCTGATGCCACCACTCAGCAGCCGAAAGCTTCATATCAGAACTCTCAAGGTGCACAAAGTGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTTTTCAGCCAATATGGTGAATTAGTACATGTGAAGATTCCATCAGGCAAGCAATGTGGATTTGTCCAATTTTCAGACAAGGCTGAGCGGGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACAACTAAGTATTACTGCATTGTCATTGATGCCCCCAGACACAGAGATTTCATTAAGAACATGATTACTGGAACATCCCAAGCTGATTGTGTTGTCCTTATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGACGGTCAGATCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACTACTCCCAAGTACTCTAACGCTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTACAACCCATACAAAATTCCATTTGTTCCCATCTATGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACTAACCTTGACTGGTACAAGGGTCTTTGTCGTGGAGGAAACTCTCCAGCTTTTGTCGTGGCAGCTGTTGCAGCCCTTATGAGTGGGCTCTTAGCTGACAGGTTTGGAAGATTTGTAATTCAACTGATGGGATTCTTCTTGGTGCATGATTATTctctcttcgatggttccagatctgcccttactctccaattttga 4017 0.3993 MEVINQNKEDNPMAEEGNDNAIDHNEDTCYGVEDEREEQNSSENEGEEEEEEEKEEEAEEEDTECENPFEFENGINPLDLIGNSDSGLPCYQTIKDYVVLCNKKRKPLEQCHREGTSSKKAREEDIAEVSSAEMTEIELMNFDQCGRSKKKVPRKRGRRKGSKKKLDERLSRMLGDANLHYANRRYDMAITVLHEVVRLKPTLPESYHILGLVHNAIGDYKKGMSFYKIAARLTPKDSSLWKMLFAWYIEQGDIGEASCCLSEAIKADPKDSTLRSYRAMLYAELQDFQKAAVAYEQVYQLCCENVDALKEAAKFYQKCGQVERSVCILEDYLKNQPDGVNASVVDLLGAILMEINAHDKALQYIELSQVDGKELPLTLKVKAGICHVHLGNMEKAQVFFNDLKPENANKHVELITEVADSLMGLGHYNSALNYFPMLKGNSKNENGLLYLKIARCYQFLGERLQAILSFSKGKVLFLLRTEFRQIILNEKTLQDDVEARIALASLLVEEGKENDAISLLSPPKDSDPGEAHSEKSNRWWVDVRIKLKLCNIFHSRGMFNDFVGVSFPLVHESLHVVTPRQKVIFEKLNLSIHSFFHTSTFTHKMLCMGCFQKPNTDSPLCNLHKDEEYHQLIIDLCNALASLQRYREALEIINLTLRSAHTSLSAENNEKLRSLGTQMAYNTTNPRHGFHCVKCIVQQHPQNVAAWNCYYKVISRLENRDTRHDKFVRAMQGKFVDCVPPILISAHQFTLCSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCVGQGLAFLCNNLRICQNSQVCFYEFPFSGRDDAVWTWHGATAAKQYQQPPLQQPYIMMQPQLQAQSPVWSQSAQPPQQPASADKVRTLWIDNLQYWMDENYLYTCFGQNGEVISLKVVRNKQTSQSEGYGFIEFNSHATAERVLQTYNGAIMPNGGQSYRLNWATFSAGERSSQQDDGPDHTIFVGDLAVDVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADESEQMRALTEMQGVLCSTRPMRIGPTTNKNPDATTQQPKASYQNSQGAQSENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPSGKQCGFVQFSDKAERERGITIDIALWKFETTKYYCIVIDAPRHRDFIKNMITGTSQADCVVLIIDSTTGGFEAGISKDGQIREHALLAFTLGVKQMICCCNKMDATTPKYSNARYDEIVKEVSSYLKKVGYNPYKIPFVPIYGFEGDNMIERSTNLDWYKGLCRGGNSPAFVVAAVAALMSGLLADRFGRFVIQLMGFFLVHDYSLFDGSRSALTLQF 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01700 1338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1087 1145 IPR000504 GO:0003723
Car05g01700 1338 MobiDBLite consensus disorder prediction 1050 1086 - -
Car05g01700 1338 MobiDBLite consensus disorder prediction 149 163 - -
Car05g01700 1338 Pfam Tetratricopeptide repeat 177 237 - -
Car05g01700 1338 Gene3D - 978 1054 IPR012677 -
Car05g01700 1338 SUPERFAMILY RNA-binding domain, RBD 884 1060 IPR035979 GO:0003676
Car05g01700 1338 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 15 821 IPR039340 GO:0006383
Car05g01700 1338 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1130 1290 IPR000795 GO:0003924|GO:0005525
Car05g01700 1338 SMART rrm1_1 1088 1149 IPR000504 GO:0003723
Car05g01700 1338 SMART rrm1_1 980 1054 IPR000504 GO:0003723
Car05g01700 1338 SMART rrm1_1 885 960 IPR000504 GO:0003723
Car05g01700 1338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 981 1044 IPR000504 GO:0003723
Car05g01700 1338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1089 1136 IPR000504 GO:0003723
Car05g01700 1338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 886 951 IPR000504 GO:0003723
Car05g01700 1338 ProSiteProfiles TPR repeat profile. 204 237 IPR019734 GO:0005515
Car05g01700 1338 SUPERFAMILY TPR-like 277 472 IPR011990 GO:0005515
Car05g01700 1338 MobiDBLite consensus disorder prediction 1051 1086 - -
Car05g01700 1338 MobiDBLite consensus disorder prediction 12 37 - -
Car05g01700 1338 MobiDBLite consensus disorder prediction 147 167 - -
Car05g01700 1338 Gene3D Tetratricopeptide repeat domain 163 370 IPR011990 GO:0005515
Car05g01700 1338 Gene3D Tetratricopeptide repeat domain 373 561 IPR011990 GO:0005515
Car05g01700 1338 Gene3D - 1137 1284 IPR027417 -
Car05g01700 1338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 979 1058 IPR000504 GO:0003723
Car05g01700 1338 SUPERFAMILY RNA-binding domain, RBD 1069 1137 IPR035979 GO:0003676
Car05g01700 1338 Pfam Elongation factor Tu GTP binding domain 1130 1270 IPR000795 GO:0003924|GO:0005525
Car05g01700 1338 MobiDBLite consensus disorder prediction 38 68 - -
Car05g01700 1338 CDD RRM1_SECp43_like 885 965 - -
Car05g01700 1338 SMART tpr_5 204 237 IPR019734 GO:0005515
Car05g01700 1338 SMART tpr_5 170 203 IPR019734 GO:0005515
Car05g01700 1338 SMART tpr_5 272 305 IPR019734 GO:0005515
Car05g01700 1338 SMART tpr_5 238 271 IPR019734 GO:0005515
Car05g01700 1338 SUPERFAMILY TPR-like 177 367 IPR011990 GO:0005515
Car05g01700 1338 Gene3D - 1057 1136 IPR012677 -
Car05g01700 1338 MobiDBLite consensus disorder prediction 1 73 - -
Car05g01700 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1126 1283 IPR027417 -
Car05g01700 1338 Gene3D - 839 974 IPR012677 -
Car05g01700 1338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 884 964 IPR000504 GO:0003723
Car05g01700 1338 CDD RRM2_SECp43_like 978 1057 - -
Car05g01700 1338 PRINTS GTP-binding elongation factor signature 1136 1144 IPR000795 GO:0003924|GO:0005525
Car05g01700 1338 PRINTS GTP-binding elongation factor signature 1172 1183 IPR000795 GO:0003924|GO:0005525
Car05g01700 1338 PRINTS GTP-binding elongation factor signature 1216 1225 IPR000795 GO:0003924|GO:0005525
Car05g01700 1338 PRINTS GTP-binding elongation factor signature 1156 1166 IPR000795 GO:0003924|GO:0005525
Car05g01700 1338 Coils Coil 32 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01700 Car-Chr5 61815190 61843053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01700 1132 1281 Eukaryotic Initiation Factors Gene Family AT1G07930 94.667 2.51e-93 304