Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01691 ATGATCATTAGATATGTTAGTCTGAGACTTTGGCGCGGCCTCCTCTCTTCTCTTTTCCTCTATCGCACGCCGGTACACCATCGTCAATTCGGTCTTCACAGCCTTTCTCCAGCCACCAGTGGCTCCTCATTGCCTCCAACAGTGAAGATAAAACCACGCATCCAGTGCATCTCCAAATCCTCCAACTTCAAGATGTTTGGTTCTGTCAGAATTGTTTCTAATATTGCTGCCTGCATTCGTCAAAACCTGTCTCTTCATGGTGTCCAAGTACGAAATATAAACATTGGAGGTGGTCTTGGAGGTGAGATTCCAGATAGCAAGCGCCTTCAGTATGCGCTTCAGCATCTCCACGGGGTTGGCCGTTCAAAAGCTCATCACATTGTGTGTGAGCTTGGAGTTGAGAACAAATATGTGAAGGATCTAAGCAAAAGAGAACTATATTCCCTTCGAGAATTGCTTTCCAAGTACTTGATTGGAAATGATTTGAAAAAGTTAGTTGAGAGAGATGTGGGAAGGTTGGTTGGTATCCAATGTTACAGAGGAATCAGGCATGTCGATGGTTTACCCTGTCGGGGACAACGAACTCATACAAATTCCCGCACCAGGAGAACTATGCGTACTTTTGGGGGTTCAAGATAA 639 0.4507 MIIRYVSLRLWRGLLSSLFLYRTPVHHRQFGLHSLSPATSGSSLPPTVKIKPRIQCISKSSNFKMFGSVRIVSNIAACIRQNLSLHGVQVRNINIGGGLGGEIPDSKRLQYALQHLHGVGRSKAHHIVCELGVENKYVKDLSKRELYSLRELLSKYLIGNDLKKLVERDVGRLVGIQCYRGIRHVDGLPCRGQRTHTNSRTRRTMRTFGGSR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01691 212 Gene3D 30s ribosomal protein s13, domain 2 166 212 IPR027437 -
Car05g01691 212 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 67 206 - -
Car05g01691 212 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 67 206 - -
Car05g01691 212 Pfam Ribosomal protein S13/S18 100 201 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car05g01691 212 ProSitePatterns Ribosomal protein S13 signature. 180 193 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car05g01691 212 SUPERFAMILY S13-like H2TH domain 100 206 IPR010979 GO:0003676
Car05g01691 212 Hamap 30S ribosomal protein S13 [rpsM]. 89 211 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car05g01691 212 ProSiteProfiles Ribosomal protein S13 family profile. 99 204 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car05g01691 212 Gene3D - 99 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01691 Car-Chr5 61733505 61735584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01691 86 205 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 27.083 8.58e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01691 K02952 - gmx:100527465 242.276