Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01690 ATGGCAATAGCAACGGcttcttcttcttcttgttcctcCAAACTCAAACTCTCACAACACCCACCACTCTCCCACACTTTCATCGCATCCGCTTCAATTTCAAACTCCAATACTTTCCGTTCCACCACACACCCCAAACTAACCCTAACTCGTCTATCCTCTTCATTTCTAAACCCTTCCACAATCCTCCATCTCACTCCCTCCTCTCAACAACAACGCACCAACCGTCCTTCCTTCACCGTCCGTGCCGCACGTGGCAAATTCGAACGCAAAAAACCTCATCTCAACATAGGCACAATTGGCCACGTCGACCATGGAAAAACCACTCTCACTGCTGCTCTCACTATGGCTCTAGCTTCCCTCGGTAACAGCGCCCCTAAAAAATACGATGAAATTGACGCTGCACCGGAAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCGTTGAGTACGAGACTGAAACTCGTCATTATGCTCACGTTGATTGCCCTGGTCACGCTGATTACGTCAAAAATATGATTACTGGTGCCGCTCAAATGGACGGCGCTATCCTCGTTGTCTCCGGCGCCGATGGCCCCATGCCACAAACCAAAGAACATATCCTTCTCGCCAAACAGGTTGGTGTTCCGAGCGTGGTTGTGTTTTTGAACAAGCAGGACCAAGTGGATGATGAGGAGCTTTTAGAACTTGTGGAGCTTGAAGTTAGGGAGCTTCTCTCGTCTTATGAGTTTCCCGGTGATGACATTCCGATTGTTTCCGGTTCGGCCCTATTGGCATTGGAAGCTTTAATGGCTAACCCTGCACTCAAACGTGGCGATAACCAGTGGGTGGATAAGATTTACAAGCTTATGGATGAGGTTGACAACTACATACCGATCCCACAACGCCAAACGGAACTCCCCTTCTTGCTAGCTGTTGAGGATGTGTTTTCCATCACCGGTCGTGGAACGGTGGCAACTGGGAGAATTGAGAGGGGGACTGTTAAAGTTGGAGATACAGTCGACCTTGTTGGTTTGAGGGAAACGAGGAACACAACAGTGACAGGTGTGGAAATGTTTCAGAAAATTTTGGATGATGCTATGGCTGGTGACAATGTGGGGTTGTTACTGAGAGGTGTTCAGAAGATTGATATTCAGAGAGGAATGGTTTTGGCTAAGCCTGGGACTATTACTCCTCACTCTAAGTTTAGTGCTATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGAAGACACTCACCTTTCTTTGCTGGTTATAGGCCTCAATTTTATATGAGGACTACCGATGTCACTGGAAAAGTTACTTCTATTATGAATGATAAGGACGAGGAGTCAAAGATGGTGATGCCCGGTGATCGTGTTAAGATGGTCGTTGAACTCATTGTTCCTGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACCGTTGGAGCTGGTGTTATCGGAGCTATCATTGAGTGA 1698 0.3969 MAIATASSSSCSSKLKLSQHPPLSHTFIASASISNSNTFRSTTHPKLTLTRLSSSFLNPSTILHLTPSSQQQRTNRPSFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIVSGSALLALEALMANPALKRGDNQWVDKIYKLMDEVDNYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRIERGTVKVGDTVDLVGLRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGVQKIDIQRGMVLAKPGTITPHSKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01690 565 CDD EFTU_III 466 560 - -
Car05g01690 565 SUPERFAMILY Translation proteins 371 467 IPR009000 -
Car05g01690 565 Pfam Elongation factor Tu C-terminal domain 464 563 IPR004160 -
Car05g01690 565 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 92 370 IPR000795 GO:0003924|GO:0005525
Car05g01690 565 PANTHER ELONGATION FACTOR TU 222 565 - -
Car05g01690 565 PANTHER ELONGATION FACTOR TU 28 139 - -
Car05g01690 565 TIGRFAM EF-Tu: translation elongation factor Tu 222 565 IPR004541 GO:0003746|GO:0005525|GO:0006414
Car05g01690 565 Hamap Elongation factor Tu [tuf]. 83 565 IPR004541 GO:0003746|GO:0005525|GO:0006414
Car05g01690 565 Gene3D - 84 369 IPR027417 -
Car05g01690 565 PANTHER ELONGATION FACTOR TU-RELATED 222 565 - -
Car05g01690 565 PANTHER ELONGATION FACTOR TU-RELATED 28 139 - -
Car05g01690 565 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 464 564 IPR009001 -
Car05g01690 565 Pfam Elongation factor Tu domain 2 391 459 IPR004161 GO:0005525
Car05g01690 565 Gene3D Translation factors 504 564 - -
Car05g01690 565 Gene3D Translation factors 372 500 - -
Car05g01690 565 CDD EFTU_II 377 463 IPR033720 -
Car05g01690 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 129 IPR027417 -
Car05g01690 565 Pfam Elongation factor Tu GTP binding domain 92 138 IPR000795 GO:0003924|GO:0005525
Car05g01690 565 Pfam Elongation factor Tu GTP binding domain 224 367 IPR000795 GO:0003924|GO:0005525
Car05g01690 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 385 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01690 Car-Chr5 61707659 61709583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01690 225 563 Eukaryotic Initiation Factors Gene Family AT5G60390 28.804 2.80e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01690 K02358 - rcu:8278277 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01690 05 61707659 61709583 Car05g01690 05 61707659 61709583 ECH